Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and
The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Li, Juanjuan [verfasserIn] Zhang, Na [verfasserIn] Zhou, Yingying [verfasserIn] Huang, Qian [verfasserIn] Xu, Jiahao [verfasserIn] Cen, Haiyan [verfasserIn] Ali, Basharat [verfasserIn] Shi, Bixian [verfasserIn] Xu, Ling [verfasserIn] Yang, Chong [verfasserIn] Zhou, Weijun [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2022 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Industrial crops and products - New York, NY [u.a.] : Elsevier, 1992, 193 |
|---|---|
| Übergeordnetes Werk: |
volume:193 |
| DOI / URN: |
10.1016/j.indcrop.2022.116123 |
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| Katalog-ID: |
ELV06524317X |
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| 520 | |a The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. | ||
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10.1016/j.indcrop.2022.116123 doi (DE-627)ELV06524317X (ELSEVIER)S0926-6690(22)01606-5 DE-627 ger DE-627 rda eng 630 640 VZ 48.30 bkl Li, Juanjuan verfasserin aut Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. HabZIP Protein-protein interaction Abiotic stress Orobanche cumana Zhang, Na verfasserin aut Zhou, Yingying verfasserin aut Huang, Qian verfasserin aut Xu, Jiahao verfasserin (orcid)0000-0001-9894-228X aut Cen, Haiyan verfasserin (orcid)0000-0003-0266-2123 aut Ali, Basharat verfasserin (orcid)0000-0002-5965-7352 aut Shi, Bixian verfasserin aut Xu, Ling verfasserin aut Yang, Chong verfasserin aut Zhou, Weijun verfasserin (orcid)0000-0002-1471-9644 aut Enthalten in Industrial crops and products New York, NY [u.a.] : Elsevier, 1992 193 Online-Ressource (DE-627)300894678 (DE-600)1483245-8 (DE-576)259270792 1872-633X nnns volume:193 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.30 Natürliche Ressourcen Land- und Forstwirtschaft VZ AR 193 |
| spelling |
10.1016/j.indcrop.2022.116123 doi (DE-627)ELV06524317X (ELSEVIER)S0926-6690(22)01606-5 DE-627 ger DE-627 rda eng 630 640 VZ 48.30 bkl Li, Juanjuan verfasserin aut Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. HabZIP Protein-protein interaction Abiotic stress Orobanche cumana Zhang, Na verfasserin aut Zhou, Yingying verfasserin aut Huang, Qian verfasserin aut Xu, Jiahao verfasserin (orcid)0000-0001-9894-228X aut Cen, Haiyan verfasserin (orcid)0000-0003-0266-2123 aut Ali, Basharat verfasserin (orcid)0000-0002-5965-7352 aut Shi, Bixian verfasserin aut Xu, Ling verfasserin aut Yang, Chong verfasserin aut Zhou, Weijun verfasserin (orcid)0000-0002-1471-9644 aut Enthalten in Industrial crops and products New York, NY [u.a.] : Elsevier, 1992 193 Online-Ressource (DE-627)300894678 (DE-600)1483245-8 (DE-576)259270792 1872-633X nnns volume:193 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.30 Natürliche Ressourcen Land- und Forstwirtschaft VZ AR 193 |
| allfields_unstemmed |
10.1016/j.indcrop.2022.116123 doi (DE-627)ELV06524317X (ELSEVIER)S0926-6690(22)01606-5 DE-627 ger DE-627 rda eng 630 640 VZ 48.30 bkl Li, Juanjuan verfasserin aut Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. HabZIP Protein-protein interaction Abiotic stress Orobanche cumana Zhang, Na verfasserin aut Zhou, Yingying verfasserin aut Huang, Qian verfasserin aut Xu, Jiahao verfasserin (orcid)0000-0001-9894-228X aut Cen, Haiyan verfasserin (orcid)0000-0003-0266-2123 aut Ali, Basharat verfasserin (orcid)0000-0002-5965-7352 aut Shi, Bixian verfasserin aut Xu, Ling verfasserin aut Yang, Chong verfasserin aut Zhou, Weijun verfasserin (orcid)0000-0002-1471-9644 aut Enthalten in Industrial crops and products New York, NY [u.a.] : Elsevier, 1992 193 Online-Ressource (DE-627)300894678 (DE-600)1483245-8 (DE-576)259270792 1872-633X nnns volume:193 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.30 Natürliche Ressourcen Land- und Forstwirtschaft VZ AR 193 |
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10.1016/j.indcrop.2022.116123 doi (DE-627)ELV06524317X (ELSEVIER)S0926-6690(22)01606-5 DE-627 ger DE-627 rda eng 630 640 VZ 48.30 bkl Li, Juanjuan verfasserin aut Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. HabZIP Protein-protein interaction Abiotic stress Orobanche cumana Zhang, Na verfasserin aut Zhou, Yingying verfasserin aut Huang, Qian verfasserin aut Xu, Jiahao verfasserin (orcid)0000-0001-9894-228X aut Cen, Haiyan verfasserin (orcid)0000-0003-0266-2123 aut Ali, Basharat verfasserin (orcid)0000-0002-5965-7352 aut Shi, Bixian verfasserin aut Xu, Ling verfasserin aut Yang, Chong verfasserin aut Zhou, Weijun verfasserin (orcid)0000-0002-1471-9644 aut Enthalten in Industrial crops and products New York, NY [u.a.] : Elsevier, 1992 193 Online-Ressource (DE-627)300894678 (DE-600)1483245-8 (DE-576)259270792 1872-633X nnns volume:193 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.30 Natürliche Ressourcen Land- und Forstwirtschaft VZ AR 193 |
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10.1016/j.indcrop.2022.116123 doi (DE-627)ELV06524317X (ELSEVIER)S0926-6690(22)01606-5 DE-627 ger DE-627 rda eng 630 640 VZ 48.30 bkl Li, Juanjuan verfasserin aut Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and 2022 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. HabZIP Protein-protein interaction Abiotic stress Orobanche cumana Zhang, Na verfasserin aut Zhou, Yingying verfasserin aut Huang, Qian verfasserin aut Xu, Jiahao verfasserin (orcid)0000-0001-9894-228X aut Cen, Haiyan verfasserin (orcid)0000-0003-0266-2123 aut Ali, Basharat verfasserin (orcid)0000-0002-5965-7352 aut Shi, Bixian verfasserin aut Xu, Ling verfasserin aut Yang, Chong verfasserin aut Zhou, Weijun verfasserin (orcid)0000-0002-1471-9644 aut Enthalten in Industrial crops and products New York, NY [u.a.] : Elsevier, 1992 193 Online-Ressource (DE-627)300894678 (DE-600)1483245-8 (DE-576)259270792 1872-633X nnns volume:193 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_224 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2336 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4313 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4393 48.30 Natürliche Ressourcen Land- und Forstwirtschaft VZ AR 193 |
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Li, Juanjuan @@aut@@ Zhang, Na @@aut@@ Zhou, Yingying @@aut@@ Huang, Qian @@aut@@ Xu, Jiahao @@aut@@ Cen, Haiyan @@aut@@ Ali, Basharat @@aut@@ Shi, Bixian @@aut@@ Xu, Ling @@aut@@ Yang, Chong @@aut@@ Zhou, Weijun @@aut@@ |
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Li, Juanjuan |
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630 640 VZ 48.30 bkl Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and HabZIP Protein-protein interaction Abiotic stress Orobanche cumana |
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whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and |
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Whole-genome identification and expression analysis of basic leucine zipper genes under cadmium, drought and |
| abstract |
The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. |
| abstractGer |
The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. |
| abstract_unstemmed |
The basic leucine zipper (bZIP) family of transcription factors (TFs) plays crucial role in response to different environment stresses. Helianthus annuus L. is one of the four major oil crops cultivated throughout the world. However, genome-wide characterization of bZIP genes and their evolution in sunflower has not been reported. In this study, we tried to identify 117 bZIP genes from H. annuus genome, which were unevenly distributed across 17 chromosomes. Evolutionary analysis indicated that HabZIPs could be divided into 12 groups (A, B, C, D, E, F, G, H, I, J, K and S) according to the phylogenetic relationship with those in Arabidopsis. Nevertheless, there was no HabZIP genes in group M, which included the homolog of AtbZIP74, indicating that this individual group was missing during the evolution of H. annuus. Collinearity analysis found 59 pairs of segmental duplicated genes, demonstrating that segmental duplication events played a crucial role in the expansion of HabZIP family. Moreover, we conducted the protein-protein interaction network prediction analysis to identify the key bZIP protein and other important TFs in sunflower which played significant roles in response to different stresses. The expression patterns of HabZIPs at different developmental stages of sunflower exhibited an organic-specific manner. Further, RNA-seq analysis showed that HabZIP21, HabZIP113, HabZIP84 and HabZIP76 were the most sensitive genes in response to cadmium, heat, cold, drought and salinity stresses. Expression patterns based on qRT-PCR showed that HabZIP16, HabZIP24, HabZIP40, HabZIP71 and HabZIP96 genes were specifically triggered in abiotic stresses i.e., cadmium, drought and biotic Orobanche cumana stress. This study provides insights into HabZIP gene family and their potential functions involved in growth, development and various stresses. This will facilitate further research on the bZIP gene family regarding their evolutionary history and biological functions. |
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