Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra (
Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) str...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Sun, Jian [verfasserIn] Xu, Gaowen [verfasserIn] Hu, Yudie [verfasserIn] Cheng, Yujing [verfasserIn] Wang, Xiaoqiu [verfasserIn] Yang, Jing [verfasserIn] Yang, Meng [verfasserIn] Xie, Dongwei [verfasserIn] Dai, Zhigang [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2023 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Scientia horticulturae - Amsterdam [u.a.] : Elsevier Science, 1973, 313 |
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| Übergeordnetes Werk: |
volume:313 |
| DOI / URN: |
10.1016/j.scienta.2023.111922 |
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ELV065837789 |
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| 520 | |a Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. | ||
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| 650 | 4 | |a Salt tolerance | |
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10.1016/j.scienta.2023.111922 doi (DE-627)ELV065837789 (ELSEVIER)S0304-4238(23)00097-3 DE-627 ger DE-627 rda eng 630 640 VZ 48.50 bkl Sun, Jian verfasserin aut Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. Okra GBS Genetic diversity Population structure Salt tolerance GWAS Xu, Gaowen verfasserin aut Hu, Yudie verfasserin aut Cheng, Yujing verfasserin aut Wang, Xiaoqiu verfasserin aut Yang, Jing verfasserin aut Yang, Meng verfasserin aut Xie, Dongwei verfasserin (orcid)0000-0002-9884-808X aut Dai, Zhigang verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 313 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:313 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 Pflanzenproduktion: Allgemeines VZ AR 313 |
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10.1016/j.scienta.2023.111922 doi (DE-627)ELV065837789 (ELSEVIER)S0304-4238(23)00097-3 DE-627 ger DE-627 rda eng 630 640 VZ 48.50 bkl Sun, Jian verfasserin aut Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. Okra GBS Genetic diversity Population structure Salt tolerance GWAS Xu, Gaowen verfasserin aut Hu, Yudie verfasserin aut Cheng, Yujing verfasserin aut Wang, Xiaoqiu verfasserin aut Yang, Jing verfasserin aut Yang, Meng verfasserin aut Xie, Dongwei verfasserin (orcid)0000-0002-9884-808X aut Dai, Zhigang verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 313 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:313 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 Pflanzenproduktion: Allgemeines VZ AR 313 |
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10.1016/j.scienta.2023.111922 doi (DE-627)ELV065837789 (ELSEVIER)S0304-4238(23)00097-3 DE-627 ger DE-627 rda eng 630 640 VZ 48.50 bkl Sun, Jian verfasserin aut Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. Okra GBS Genetic diversity Population structure Salt tolerance GWAS Xu, Gaowen verfasserin aut Hu, Yudie verfasserin aut Cheng, Yujing verfasserin aut Wang, Xiaoqiu verfasserin aut Yang, Jing verfasserin aut Yang, Meng verfasserin aut Xie, Dongwei verfasserin (orcid)0000-0002-9884-808X aut Dai, Zhigang verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 313 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:313 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 Pflanzenproduktion: Allgemeines VZ AR 313 |
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10.1016/j.scienta.2023.111922 doi (DE-627)ELV065837789 (ELSEVIER)S0304-4238(23)00097-3 DE-627 ger DE-627 rda eng 630 640 VZ 48.50 bkl Sun, Jian verfasserin aut Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. Okra GBS Genetic diversity Population structure Salt tolerance GWAS Xu, Gaowen verfasserin aut Hu, Yudie verfasserin aut Cheng, Yujing verfasserin aut Wang, Xiaoqiu verfasserin aut Yang, Jing verfasserin aut Yang, Meng verfasserin aut Xie, Dongwei verfasserin (orcid)0000-0002-9884-808X aut Dai, Zhigang verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 313 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:313 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 Pflanzenproduktion: Allgemeines VZ AR 313 |
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10.1016/j.scienta.2023.111922 doi (DE-627)ELV065837789 (ELSEVIER)S0304-4238(23)00097-3 DE-627 ger DE-627 rda eng 630 640 VZ 48.50 bkl Sun, Jian verfasserin aut Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. Okra GBS Genetic diversity Population structure Salt tolerance GWAS Xu, Gaowen verfasserin aut Hu, Yudie verfasserin aut Cheng, Yujing verfasserin aut Wang, Xiaoqiu verfasserin aut Yang, Jing verfasserin aut Yang, Meng verfasserin aut Xie, Dongwei verfasserin (orcid)0000-0002-9884-808X aut Dai, Zhigang verfasserin aut Enthalten in Scientia horticulturae Amsterdam [u.a.] : Elsevier Science, 1973 313 Online-Ressource (DE-627)320569748 (DE-600)2016351-4 (DE-576)105430587 1879-1018 nnns volume:313 GBV_USEFLAG_U GBV_ELV SYSFLAG_U GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 Pflanzenproduktion: Allgemeines VZ AR 313 |
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630 640 VZ 48.50 bkl Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( Okra GBS Genetic diversity Population structure Salt tolerance GWAS |
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genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( |
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Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( |
| abstract |
Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. |
| abstractGer |
Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. |
| abstract_unstemmed |
Okra is a vegetable that is widely grown worldwide. However, there are few reports on genetic diversity analysis and genome-wide association studies (GWASs) based on large-scale molecular markers in okra. In this study, 353,001 SNP markers were developed based on a genotyping by sequencing (GBS) strategy to analyze the population structure, genetic diversity and GWAS of 180 okra germplasms from all over the world. Both phylogenetic tree and population structure analyses classified all accessions into three categories, and the classification of most accessions in the two methods were the same. Some okra accessions from warm and cool areas were classified into one category, and some from hot areas were classified into one category. The Shannon‒Wiener index (I), Nei's genetic diversity index (Hei ), minor allele frequency (MAF) and polymorphic information content (PIC) of the 180 okra accessions were 0.5071, 0.3366, 0.2580 and 0.2691, respectively. The B subgroup had the highest level of genetic diversity. A total of 180 okra seedlings were treated with 120 mM (T1) and 200 mM (T2) NaCl solutions, and salt tolerance-related traits were analyzed by GWAS. Seventy-seven SNP loci were identified to be associated with four salt tolerance traits. c3341.graph_c0 was aligned in multiple SNP loci, which may be an important unigene regulating the salt tolerance of okra seedlings. To our knowledge, this was the first study to use large-scale SNP markers to carry out population genetic analysis and GWAS in okra. |
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Genome-wide assessment of genetic diversity and association mapping for salt tolerance traits in okra ( |
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| score |
7.400426 |