Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress

Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glut...
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Autor*in:	Parveen, Kauser [verfasserIn] Saddique, Muhammad Abu Bakar [verfasserIn] Ali, Zulfiqar [verfasserIn] Ur Rehman, Shoaib [verfasserIn] Zaib-Un-Nisa [verfasserIn] Khan, Zulqurnain [verfasserIn] Waqas, Muhammad [verfasserIn] Munir, Muhammad Zeeshan [verfasserIn] Hussain, Niaz [verfasserIn] Muneer, Muhammad Atif [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR

Übergeordnetes Werk:	Enthalten in: Gene - Amsterdam : Elsevier, 1976, 898
Übergeordnetes Werk:	volume:898

DOI / URN:	10.1016/j.gene.2023.148088

Katalog-ID:	ELV066775884

Internformat


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100	1		\|a Parveen, Kauser \|e verfasserin \|0 (orcid)0009-0000-3830-4307 \|4 aut
245	1	0	\|a Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
264		1	\|c 2023
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337			\|a Computermedien \|b c \|2 rdamedia
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520			\|a Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance.
650		4	\|a Chickpea
650		4	\|a Gene expression
650		4	\|a Salt stress
650		4	\|a Phylogenetic analysis
650		4	\|a qRT-PCR
700	1		\|a Saddique, Muhammad Abu Bakar \|e verfasserin \|4 aut
700	1		\|a Ali, Zulfiqar \|e verfasserin \|4 aut
700	1		\|a Ur Rehman, Shoaib \|e verfasserin \|4 aut
700	1		\|a Zaib-Un-Nisa \|e verfasserin \|4 aut
700	1		\|a Khan, Zulqurnain \|e verfasserin \|4 aut
700	1		\|a Waqas, Muhammad \|e verfasserin \|4 aut
700	1		\|a Munir, Muhammad Zeeshan \|e verfasserin \|4 aut
700	1		\|a Hussain, Niaz \|e verfasserin \|4 aut
700	1		\|a Muneer, Muhammad Atif \|e verfasserin \|4 aut
773	0	8	\|i Enthalten in \|t Gene \|d Amsterdam : Elsevier, 1976 \|g 898 \|h Online-Ressource \|w (DE-627)302200118 \|w (DE-600)1491012-3 \|w (DE-576)079599818 \|x 1879-0038 \|7 nnns
773	1	8	\|g volume:898
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912			\|a GBV_ILN_4249
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912			\|a GBV_ILN_4305
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936	b	k	\|a 42.00 \|j Biologie: Allgemeines \|q VZ
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allfields	10.1016/j.gene.2023.148088 doi (DE-627)ELV066775884 (ELSEVIER)S0378-1119(23)00929-0 DE-627 ger DE-627 rda eng 570 VZ BIODIV DE-30 fid 42.00 bkl Parveen, Kauser verfasserin (orcid)0009-0000-3830-4307 aut Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance. Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR Saddique, Muhammad Abu Bakar verfasserin aut Ali, Zulfiqar verfasserin aut Ur Rehman, Shoaib verfasserin aut Zaib-Un-Nisa verfasserin aut Khan, Zulqurnain verfasserin aut Waqas, Muhammad verfasserin aut Munir, Muhammad Zeeshan verfasserin aut Hussain, Niaz verfasserin aut Muneer, Muhammad Atif verfasserin aut Enthalten in Gene Amsterdam : Elsevier, 1976 898 Online-Ressource (DE-627)302200118 (DE-600)1491012-3 (DE-576)079599818 1879-0038 nnns volume:898 GBV_USEFLAG_U GBV_ELV SYSFLAG_U FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 Biologie: Allgemeines VZ AR 898
spelling	10.1016/j.gene.2023.148088 doi (DE-627)ELV066775884 (ELSEVIER)S0378-1119(23)00929-0 DE-627 ger DE-627 rda eng 570 VZ BIODIV DE-30 fid 42.00 bkl Parveen, Kauser verfasserin (orcid)0009-0000-3830-4307 aut Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance. Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR Saddique, Muhammad Abu Bakar verfasserin aut Ali, Zulfiqar verfasserin aut Ur Rehman, Shoaib verfasserin aut Zaib-Un-Nisa verfasserin aut Khan, Zulqurnain verfasserin aut Waqas, Muhammad verfasserin aut Munir, Muhammad Zeeshan verfasserin aut Hussain, Niaz verfasserin aut Muneer, Muhammad Atif verfasserin aut Enthalten in Gene Amsterdam : Elsevier, 1976 898 Online-Ressource (DE-627)302200118 (DE-600)1491012-3 (DE-576)079599818 1879-0038 nnns volume:898 GBV_USEFLAG_U GBV_ELV SYSFLAG_U FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 Biologie: Allgemeines VZ AR 898
allfields_unstemmed	10.1016/j.gene.2023.148088 doi (DE-627)ELV066775884 (ELSEVIER)S0378-1119(23)00929-0 DE-627 ger DE-627 rda eng 570 VZ BIODIV DE-30 fid 42.00 bkl Parveen, Kauser verfasserin (orcid)0009-0000-3830-4307 aut Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance. Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR Saddique, Muhammad Abu Bakar verfasserin aut Ali, Zulfiqar verfasserin aut Ur Rehman, Shoaib verfasserin aut Zaib-Un-Nisa verfasserin aut Khan, Zulqurnain verfasserin aut Waqas, Muhammad verfasserin aut Munir, Muhammad Zeeshan verfasserin aut Hussain, Niaz verfasserin aut Muneer, Muhammad Atif verfasserin aut Enthalten in Gene Amsterdam : Elsevier, 1976 898 Online-Ressource (DE-627)302200118 (DE-600)1491012-3 (DE-576)079599818 1879-0038 nnns volume:898 GBV_USEFLAG_U GBV_ELV SYSFLAG_U FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 Biologie: Allgemeines VZ AR 898
allfieldsGer	10.1016/j.gene.2023.148088 doi (DE-627)ELV066775884 (ELSEVIER)S0378-1119(23)00929-0 DE-627 ger DE-627 rda eng 570 VZ BIODIV DE-30 fid 42.00 bkl Parveen, Kauser verfasserin (orcid)0009-0000-3830-4307 aut Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance. Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR Saddique, Muhammad Abu Bakar verfasserin aut Ali, Zulfiqar verfasserin aut Ur Rehman, Shoaib verfasserin aut Zaib-Un-Nisa verfasserin aut Khan, Zulqurnain verfasserin aut Waqas, Muhammad verfasserin aut Munir, Muhammad Zeeshan verfasserin aut Hussain, Niaz verfasserin aut Muneer, Muhammad Atif verfasserin aut Enthalten in Gene Amsterdam : Elsevier, 1976 898 Online-Ressource (DE-627)302200118 (DE-600)1491012-3 (DE-576)079599818 1879-0038 nnns volume:898 GBV_USEFLAG_U GBV_ELV SYSFLAG_U FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 Biologie: Allgemeines VZ AR 898
allfieldsSound	10.1016/j.gene.2023.148088 doi (DE-627)ELV066775884 (ELSEVIER)S0378-1119(23)00929-0 DE-627 ger DE-627 rda eng 570 VZ BIODIV DE-30 fid 42.00 bkl Parveen, Kauser verfasserin (orcid)0009-0000-3830-4307 aut Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress 2023 nicht spezifiziert zzz rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance. Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR Saddique, Muhammad Abu Bakar verfasserin aut Ali, Zulfiqar verfasserin aut Ur Rehman, Shoaib verfasserin aut Zaib-Un-Nisa verfasserin aut Khan, Zulqurnain verfasserin aut Waqas, Muhammad verfasserin aut Munir, Muhammad Zeeshan verfasserin aut Hussain, Niaz verfasserin aut Muneer, Muhammad Atif verfasserin aut Enthalten in Gene Amsterdam : Elsevier, 1976 898 Online-Ressource (DE-627)302200118 (DE-600)1491012-3 (DE-576)079599818 1879-0038 nnns volume:898 GBV_USEFLAG_U GBV_ELV SYSFLAG_U FID-BIODIV SSG-OLC-PHA GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_370 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2034 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2088 GBV_ILN_2106 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2470 GBV_ILN_2507 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 Biologie: Allgemeines VZ AR 898
language	English
source	Enthalten in Gene 898 volume:898
sourceStr	Enthalten in Gene 898 volume:898
format_phy_str_mv	Article
bklname	Biologie: Allgemeines
institution	findex.gbv.de
topic_facet	Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR
dewey-raw	570
isfreeaccess_bool	false
container_title	Gene
authorswithroles_txt_mv	Parveen, Kauser @@aut@@ Saddique, Muhammad Abu Bakar @@aut@@ Ali, Zulfiqar @@aut@@ Ur Rehman, Shoaib @@aut@@ Zaib-Un-Nisa @@aut@@ Khan, Zulqurnain @@aut@@ Waqas, Muhammad @@aut@@ Munir, Muhammad Zeeshan @@aut@@ Hussain, Niaz @@aut@@ Muneer, Muhammad Atif @@aut@@
publishDateDaySort_date	2023-01-01T00:00:00Z
hierarchy_top_id	302200118
dewey-sort	3570
id	ELV066775884
language_de	englisch
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author	Parveen, Kauser
spellingShingle	Parveen, Kauser ddc 570 fid BIODIV bkl 42.00 misc Chickpea misc Gene expression misc Salt stress misc Phylogenetic analysis misc qRT-PCR Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
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topic_title	570 VZ BIODIV DE-30 fid 42.00 bkl Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress Chickpea Gene expression Salt stress Phylogenetic analysis qRT-PCR
topic	ddc 570 fid BIODIV bkl 42.00 misc Chickpea misc Gene expression misc Salt stress misc Phylogenetic analysis misc qRT-PCR
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title	Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
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title_full	Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
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author_browse	Parveen, Kauser Saddique, Muhammad Abu Bakar Ali, Zulfiqar Ur Rehman, Shoaib Zaib-Un-Nisa Khan, Zulqurnain Waqas, Muhammad Munir, Muhammad Zeeshan Hussain, Niaz Muneer, Muhammad Atif
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title_sort	genome-wide analysis of glutathione peroxidase (gpx) gene family in chickpea ( cicer arietinum l.) under salinity stress
title_auth	Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
abstract	Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance.
abstractGer	Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance.
abstract_unstemmed	Chickpea is the second most widely grown legume in the world. Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance.
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title_short	Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress
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author2	Saddique, Muhammad Abu Bakar Ali, Zulfiqar Ur Rehman, Shoaib Zaib-Un-Nisa Khan, Zulqurnain Waqas, Muhammad Munir, Muhammad Zeeshan Hussain, Niaz Muneer, Muhammad Atif
author2Str	Saddique, Muhammad Abu Bakar Ali, Zulfiqar Ur Rehman, Shoaib Zaib-Un-Nisa Khan, Zulqurnain Waqas, Muhammad Munir, Muhammad Zeeshan Hussain, Niaz Muneer, Muhammad Atif
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doi_str	10.1016/j.gene.2023.148088
up_date	2024-07-06T18:57:16.731Z
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Its cultivation is highly affected by saline soils. Salt stress damages its all growth stages from germination to maturity. It has a huge genetic diversity containing adaptation loci that can help produce salt-tolerant cultivars. The glutathione peroxidase (GPX) gene family plays an important role in regulating plant response to abiotic stimuli and protects cells from oxidative damage. In current research, the role of GPX genes is studied for inducing salt tolerance in chickpea. This study identifies the GPX gene family in Cicer arietinum. In response to the NaCl stress, the gene expression profiles of CaGPX3 were examined using real-time qRT-PCR. The results of phylogenetic analysis show that CaGPX genes have an evolutionary relationship with monocots, dicots, chlorophytes, and angiosperms. Gene structure analysis showed that CaGPX3, CaGPX4, and CaGPX5 have six, CaGPX2 has five, and CaGPX1 contains 9 exons. According to the Ka and Ks analysis chickpea has one pair of duplicated genes of GPX and the duplication was tandem with negative (purifying) selection Ka < Ks (<1). In-silico gene expression analysis revealed that CaGPX3 is a salt stress-responsive gene among all other five GPX members in chickpea. The qRT-PCR results showed that the CaGPX3 gene expression was co-ordinately regulated under salt stress conditions, confirming CaGPX3′s key involvement in salt tolerance.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Chickpea</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Gene expression</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Salt stress</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Phylogenetic analysis</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">qRT-PCR</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Saddique, Muhammad Abu Bakar</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Ali, Zulfiqar</subfield><subfield code="e">verfasserin</subfield><subfield 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Genome-wide analysis of Glutathione peroxidase (GPX) gene family in Chickpea ( Cicer arietinum L.) under salinity stress

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