Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags
In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Kiss, Daniel L [verfasserIn] |
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| Format: |
Artikel |
|---|---|
| Sprache: |
Englisch |
| Erschienen: |
2015 |
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| Rechteinformationen: |
Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. |
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| Schlagwörter: |
Capped Analysis of Gene Expression |
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| Übergeordnetes Werk: |
Enthalten in: FEBS letters - Amsterdam [u.a.] : Elsevier, 1968, 589(2015), 3, Seite 279-284 |
|---|---|
| Übergeordnetes Werk: |
volume:589 ; year:2015 ; number:3 ; pages:279-284 |
| Links: |
|---|
| DOI / URN: |
10.1016/j.febslet.2014.12.009 |
|---|
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OLC1965544584 |
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| 520 | |a In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. | ||
| 540 | |a Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies | ||
| 540 | |a Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. | ||
| 650 | 4 | |a Capped Analysis of Gene Expression | |
| 650 | 4 | |a Mammalian cell | |
| 650 | 4 | |a mRNA capping | |
| 650 | 4 | |a Cytoplasm | |
| 650 | 4 | |a Cytoplasmic capping | |
| 650 | 4 | |a Uncapped 5′ end | |
| 650 | 4 | |a CAGE | |
| 650 | 4 | |a Transcriptome - genetics | |
| 650 | 4 | |a Cytoplasm - genetics | |
| 650 | 4 | |a RNA Splice Sites - genetics | |
| 650 | 4 | |a RNA, Long Noncoding - genetics | |
| 650 | 4 | |a RNA, Messenger - genetics | |
| 650 | 4 | |a Exons - genetics | |
| 650 | 4 | |a RNA Caps - genetics | |
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| 700 | 1 | |a Bundschuh, Ralf |4 oth | |
| 700 | 1 | |a Schoenberg, Daniel R |4 oth | |
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10.1016/j.febslet.2014.12.009 doi PQ20160617 (DE-627)OLC1965544584 (DE-599)GBVOLC1965544584 (PRQ)c1828-bf6fd2544e9294602e6785d68ff6435170fe5b385302a56a72203921f20346930 (KEY)0045922420150000589000300279uncapped5endsofmrnastargetedbycytoplasmiccappingma DE-627 ger DE-627 rakwb eng 570 530 610 DNB Kiss, Daniel L verfasserin aut Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Capped Analysis of Gene Expression Mammalian cell mRNA capping Cytoplasm Cytoplasmic capping Uncapped 5′ end CAGE Transcriptome - genetics Cytoplasm - genetics RNA Splice Sites - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics Exons - genetics RNA Caps - genetics Oman, Kenji oth Bundschuh, Ralf oth Schoenberg, Daniel R oth Enthalten in FEBS letters Amsterdam [u.a.] : Elsevier, 1968 589(2015), 3, Seite 279-284 (DE-627)129522023 (DE-600)212746-5 (DE-576)014938014 0014-5793 nnns volume:589 year:2015 number:3 pages:279-284 http://dx.doi.org/10.1016/j.febslet.2014.12.009 Volltext http://onlinelibrary.wiley.com/doi/10.1016/j.febslet.2014.12.009/abstract http://www.ncbi.nlm.nih.gov/pubmed/25541487 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_21 GBV_ILN_70 GBV_ILN_211 GBV_ILN_2219 GBV_ILN_4012 GBV_ILN_4125 GBV_ILN_4219 GBV_ILN_4305 AR 589 2015 3 279-284 |
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10.1016/j.febslet.2014.12.009 doi PQ20160617 (DE-627)OLC1965544584 (DE-599)GBVOLC1965544584 (PRQ)c1828-bf6fd2544e9294602e6785d68ff6435170fe5b385302a56a72203921f20346930 (KEY)0045922420150000589000300279uncapped5endsofmrnastargetedbycytoplasmiccappingma DE-627 ger DE-627 rakwb eng 570 530 610 DNB Kiss, Daniel L verfasserin aut Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Capped Analysis of Gene Expression Mammalian cell mRNA capping Cytoplasm Cytoplasmic capping Uncapped 5′ end CAGE Transcriptome - genetics Cytoplasm - genetics RNA Splice Sites - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics Exons - genetics RNA Caps - genetics Oman, Kenji oth Bundschuh, Ralf oth Schoenberg, Daniel R oth Enthalten in FEBS letters Amsterdam [u.a.] : Elsevier, 1968 589(2015), 3, Seite 279-284 (DE-627)129522023 (DE-600)212746-5 (DE-576)014938014 0014-5793 nnns volume:589 year:2015 number:3 pages:279-284 http://dx.doi.org/10.1016/j.febslet.2014.12.009 Volltext http://onlinelibrary.wiley.com/doi/10.1016/j.febslet.2014.12.009/abstract http://www.ncbi.nlm.nih.gov/pubmed/25541487 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_21 GBV_ILN_70 GBV_ILN_211 GBV_ILN_2219 GBV_ILN_4012 GBV_ILN_4125 GBV_ILN_4219 GBV_ILN_4305 AR 589 2015 3 279-284 |
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10.1016/j.febslet.2014.12.009 doi PQ20160617 (DE-627)OLC1965544584 (DE-599)GBVOLC1965544584 (PRQ)c1828-bf6fd2544e9294602e6785d68ff6435170fe5b385302a56a72203921f20346930 (KEY)0045922420150000589000300279uncapped5endsofmrnastargetedbycytoplasmiccappingma DE-627 ger DE-627 rakwb eng 570 530 610 DNB Kiss, Daniel L verfasserin aut Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Capped Analysis of Gene Expression Mammalian cell mRNA capping Cytoplasm Cytoplasmic capping Uncapped 5′ end CAGE Transcriptome - genetics Cytoplasm - genetics RNA Splice Sites - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics Exons - genetics RNA Caps - genetics Oman, Kenji oth Bundschuh, Ralf oth Schoenberg, Daniel R oth Enthalten in FEBS letters Amsterdam [u.a.] : Elsevier, 1968 589(2015), 3, Seite 279-284 (DE-627)129522023 (DE-600)212746-5 (DE-576)014938014 0014-5793 nnns volume:589 year:2015 number:3 pages:279-284 http://dx.doi.org/10.1016/j.febslet.2014.12.009 Volltext http://onlinelibrary.wiley.com/doi/10.1016/j.febslet.2014.12.009/abstract http://www.ncbi.nlm.nih.gov/pubmed/25541487 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_21 GBV_ILN_70 GBV_ILN_211 GBV_ILN_2219 GBV_ILN_4012 GBV_ILN_4125 GBV_ILN_4219 GBV_ILN_4305 AR 589 2015 3 279-284 |
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10.1016/j.febslet.2014.12.009 doi PQ20160617 (DE-627)OLC1965544584 (DE-599)GBVOLC1965544584 (PRQ)c1828-bf6fd2544e9294602e6785d68ff6435170fe5b385302a56a72203921f20346930 (KEY)0045922420150000589000300279uncapped5endsofmrnastargetedbycytoplasmiccappingma DE-627 ger DE-627 rakwb eng 570 530 610 DNB Kiss, Daniel L verfasserin aut Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Capped Analysis of Gene Expression Mammalian cell mRNA capping Cytoplasm Cytoplasmic capping Uncapped 5′ end CAGE Transcriptome - genetics Cytoplasm - genetics RNA Splice Sites - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics Exons - genetics RNA Caps - genetics Oman, Kenji oth Bundschuh, Ralf oth Schoenberg, Daniel R oth Enthalten in FEBS letters Amsterdam [u.a.] : Elsevier, 1968 589(2015), 3, Seite 279-284 (DE-627)129522023 (DE-600)212746-5 (DE-576)014938014 0014-5793 nnns volume:589 year:2015 number:3 pages:279-284 http://dx.doi.org/10.1016/j.febslet.2014.12.009 Volltext http://onlinelibrary.wiley.com/doi/10.1016/j.febslet.2014.12.009/abstract http://www.ncbi.nlm.nih.gov/pubmed/25541487 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_21 GBV_ILN_70 GBV_ILN_211 GBV_ILN_2219 GBV_ILN_4012 GBV_ILN_4125 GBV_ILN_4219 GBV_ILN_4305 AR 589 2015 3 279-284 |
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10.1016/j.febslet.2014.12.009 doi PQ20160617 (DE-627)OLC1965544584 (DE-599)GBVOLC1965544584 (PRQ)c1828-bf6fd2544e9294602e6785d68ff6435170fe5b385302a56a72203921f20346930 (KEY)0045922420150000589000300279uncapped5endsofmrnastargetedbycytoplasmiccappingma DE-627 ger DE-627 rakwb eng 570 530 610 DNB Kiss, Daniel L verfasserin aut Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. Nutzungsrecht: FEBS Letters 589 (2015) 1873-3468 © 2015 Federation of European Biochemical Societies Copyright © 2014 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved. Capped Analysis of Gene Expression Mammalian cell mRNA capping Cytoplasm Cytoplasmic capping Uncapped 5′ end CAGE Transcriptome - genetics Cytoplasm - genetics RNA Splice Sites - genetics RNA, Long Noncoding - genetics RNA, Messenger - genetics Exons - genetics RNA Caps - genetics Oman, Kenji oth Bundschuh, Ralf oth Schoenberg, Daniel R oth Enthalten in FEBS letters Amsterdam [u.a.] : Elsevier, 1968 589(2015), 3, Seite 279-284 (DE-627)129522023 (DE-600)212746-5 (DE-576)014938014 0014-5793 nnns volume:589 year:2015 number:3 pages:279-284 http://dx.doi.org/10.1016/j.febslet.2014.12.009 Volltext http://onlinelibrary.wiley.com/doi/10.1016/j.febslet.2014.12.009/abstract http://www.ncbi.nlm.nih.gov/pubmed/25541487 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_21 GBV_ILN_70 GBV_ILN_211 GBV_ILN_2219 GBV_ILN_4012 GBV_ILN_4125 GBV_ILN_4219 GBV_ILN_4305 AR 589 2015 3 279-284 |
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Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags |
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uncapped 5′ ends of mrnas targeted by cytoplasmic capping map to the vicinity of downstream cage tags |
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Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags |
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In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. |
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In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. |
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In mammalian transcriptomes approximately 25% of 5′ ends determined by Capped Analysis of Gene Expression (CAGE) map to locations within spliced exons. The current study sought to determine if the cytoplasmic capping complex participates in generating these downstream CAGE tags. 5′‐RACE was used to amplify the uncapped ends of target transcripts that accumulate when cytoplasmic capping is blocked. Sequencing of these RACE products mapped the positions of uncapped ends either exactly to or just downstream of archived CAGE tags. These findings support a role for cytoplasmic capping in generating the downstream capped ends identified by CAGE. Capped analysis of gene expression (CAGE) mapped ∼25% of 5′ ends in spliced exons. Uncapped forms of target transcripts accumulate when cytoplasmic capping is blocked. 5′‐RACE products map to the vicinity of internal CAGE tags. Internal CAGE tags are consistent with capped ends generated by cytoplasmic capping. |
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Uncapped 5′ ends of mRNAs targeted by cytoplasmic capping map to the vicinity of downstream CAGE tags |
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