Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics
The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to char...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Jensen, Sara Munk [verfasserIn] |
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| Format: |
Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2015 |
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| Rechteinformationen: |
Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Journal of mass spectrometry - Chichester [u.a.] : Wiley, 1995, 50(2015), 3, Seite 476-487 |
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| Übergeordnetes Werk: |
volume:50 ; year:2015 ; number:3 ; pages:476-487 |
| Links: |
|---|
| DOI / URN: |
10.1002/jms.3553 |
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| 520 | |a The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. | ||
| 540 | |a Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. | ||
| 650 | 4 | |a structural characterization | |
| 650 | 4 | |a orbitrap mass spectrometry | |
| 650 | 4 | |a shotgun lipidomics | |
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| 650 | 4 | |a Sulfolobus islandicus | |
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10.1002/jms.3553 doi PQ20160617 (DE-627)OLC1966928467 (DE-599)GBVOLC1966928467 (PRQ)p2665-8261c245fdc0bc18b7eaa5cceec45cb3d3fab38c68b994d86b4c528c2e4e14a93 (KEY)0065495720150000050000300476structuralcharacterizationofetherlipidsfromthearch DE-627 ger DE-627 rakwb eng 570 540 530 DNB BIODIV fid Jensen, Sara Munk verfasserin aut Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. structural characterization orbitrap mass spectrometry shotgun lipidomics archaeal ether lipids Sulfolobus islandicus Sulfolobus - chemistry Membrane Lipids - analysis Membrane Lipids - chemistry Computational Biology - methods Mass Spectrometry - methods Brandl, Martin oth Treusch, Alexander H oth Ejsing, Christer S oth Enthalten in Journal of mass spectrometry Chichester [u.a.] : Wiley, 1995 50(2015), 3, Seite 476-487 (DE-627)182631915 (DE-600)1221763-3 (DE-576)04390775X 1076-5174 nnns volume:50 year:2015 number:3 pages:476-487 http://dx.doi.org/10.1002/jms.3553 Volltext http://onlinelibrary.wiley.com/doi/10.1002/jms.3553/abstract http://www.ncbi.nlm.nih.gov/pubmed/25800184 http://search.proquest.com/docview/1665401830 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_70 GBV_ILN_4012 AR 50 2015 3 476-487 |
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10.1002/jms.3553 doi PQ20160617 (DE-627)OLC1966928467 (DE-599)GBVOLC1966928467 (PRQ)p2665-8261c245fdc0bc18b7eaa5cceec45cb3d3fab38c68b994d86b4c528c2e4e14a93 (KEY)0065495720150000050000300476structuralcharacterizationofetherlipidsfromthearch DE-627 ger DE-627 rakwb eng 570 540 530 DNB BIODIV fid Jensen, Sara Munk verfasserin aut Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. structural characterization orbitrap mass spectrometry shotgun lipidomics archaeal ether lipids Sulfolobus islandicus Sulfolobus - chemistry Membrane Lipids - analysis Membrane Lipids - chemistry Computational Biology - methods Mass Spectrometry - methods Brandl, Martin oth Treusch, Alexander H oth Ejsing, Christer S oth Enthalten in Journal of mass spectrometry Chichester [u.a.] : Wiley, 1995 50(2015), 3, Seite 476-487 (DE-627)182631915 (DE-600)1221763-3 (DE-576)04390775X 1076-5174 nnns volume:50 year:2015 number:3 pages:476-487 http://dx.doi.org/10.1002/jms.3553 Volltext http://onlinelibrary.wiley.com/doi/10.1002/jms.3553/abstract http://www.ncbi.nlm.nih.gov/pubmed/25800184 http://search.proquest.com/docview/1665401830 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_70 GBV_ILN_4012 AR 50 2015 3 476-487 |
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10.1002/jms.3553 doi PQ20160617 (DE-627)OLC1966928467 (DE-599)GBVOLC1966928467 (PRQ)p2665-8261c245fdc0bc18b7eaa5cceec45cb3d3fab38c68b994d86b4c528c2e4e14a93 (KEY)0065495720150000050000300476structuralcharacterizationofetherlipidsfromthearch DE-627 ger DE-627 rakwb eng 570 540 530 DNB BIODIV fid Jensen, Sara Munk verfasserin aut Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. structural characterization orbitrap mass spectrometry shotgun lipidomics archaeal ether lipids Sulfolobus islandicus Sulfolobus - chemistry Membrane Lipids - analysis Membrane Lipids - chemistry Computational Biology - methods Mass Spectrometry - methods Brandl, Martin oth Treusch, Alexander H oth Ejsing, Christer S oth Enthalten in Journal of mass spectrometry Chichester [u.a.] : Wiley, 1995 50(2015), 3, Seite 476-487 (DE-627)182631915 (DE-600)1221763-3 (DE-576)04390775X 1076-5174 nnns volume:50 year:2015 number:3 pages:476-487 http://dx.doi.org/10.1002/jms.3553 Volltext http://onlinelibrary.wiley.com/doi/10.1002/jms.3553/abstract http://www.ncbi.nlm.nih.gov/pubmed/25800184 http://search.proquest.com/docview/1665401830 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_70 GBV_ILN_4012 AR 50 2015 3 476-487 |
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10.1002/jms.3553 doi PQ20160617 (DE-627)OLC1966928467 (DE-599)GBVOLC1966928467 (PRQ)p2665-8261c245fdc0bc18b7eaa5cceec45cb3d3fab38c68b994d86b4c528c2e4e14a93 (KEY)0065495720150000050000300476structuralcharacterizationofetherlipidsfromthearch DE-627 ger DE-627 rakwb eng 570 540 530 DNB BIODIV fid Jensen, Sara Munk verfasserin aut Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. structural characterization orbitrap mass spectrometry shotgun lipidomics archaeal ether lipids Sulfolobus islandicus Sulfolobus - chemistry Membrane Lipids - analysis Membrane Lipids - chemistry Computational Biology - methods Mass Spectrometry - methods Brandl, Martin oth Treusch, Alexander H oth Ejsing, Christer S oth Enthalten in Journal of mass spectrometry Chichester [u.a.] : Wiley, 1995 50(2015), 3, Seite 476-487 (DE-627)182631915 (DE-600)1221763-3 (DE-576)04390775X 1076-5174 nnns volume:50 year:2015 number:3 pages:476-487 http://dx.doi.org/10.1002/jms.3553 Volltext http://onlinelibrary.wiley.com/doi/10.1002/jms.3553/abstract http://www.ncbi.nlm.nih.gov/pubmed/25800184 http://search.proquest.com/docview/1665401830 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_70 GBV_ILN_4012 AR 50 2015 3 476-487 |
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10.1002/jms.3553 doi PQ20160617 (DE-627)OLC1966928467 (DE-599)GBVOLC1966928467 (PRQ)p2665-8261c245fdc0bc18b7eaa5cceec45cb3d3fab38c68b994d86b4c528c2e4e14a93 (KEY)0065495720150000050000300476structuralcharacterizationofetherlipidsfromthearch DE-627 ger DE-627 rakwb eng 570 540 530 DNB BIODIV fid Jensen, Sara Munk verfasserin aut Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. Nutzungsrecht: Copyright © 2015 John Wiley & Sons, Ltd. structural characterization orbitrap mass spectrometry shotgun lipidomics archaeal ether lipids Sulfolobus islandicus Sulfolobus - chemistry Membrane Lipids - analysis Membrane Lipids - chemistry Computational Biology - methods Mass Spectrometry - methods Brandl, Martin oth Treusch, Alexander H oth Ejsing, Christer S oth Enthalten in Journal of mass spectrometry Chichester [u.a.] : Wiley, 1995 50(2015), 3, Seite 476-487 (DE-627)182631915 (DE-600)1221763-3 (DE-576)04390775X 1076-5174 nnns volume:50 year:2015 number:3 pages:476-487 http://dx.doi.org/10.1002/jms.3553 Volltext http://onlinelibrary.wiley.com/doi/10.1002/jms.3553/abstract http://www.ncbi.nlm.nih.gov/pubmed/25800184 http://search.proquest.com/docview/1665401830 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-CHE SSG-OLC-PHA SSG-OLC-DE-84 GBV_ILN_70 GBV_ILN_4012 AR 50 2015 3 476-487 |
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structural characterization of ether lipids from the archaeon sulfolobus islandicus by high‐resolution shotgun lipidomics |
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Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics |
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The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. |
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The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. |
| abstract_unstemmed |
The molecular structures, biosynthetic pathways and physiological functions of membrane lipids produced by organisms in the domain Archaea are poorly characterized as compared with that of counterparts in Bacteria and Eukaryota. Here we report on the use of high‐resolution shotgun lipidomics to characterize, for the first time, the lipid complement of the archaeon Sulfolobus islandicus . To support the identification of lipids in S . islandicus , we first compiled a database of ether lipid species previously ascribed to Archaea. Next, we analyzed the lipid complement of S . islandicus by high‐resolution Fourier transform mass spectrometry using an ion trap‐orbitrap mass spectrometer. This analysis identified five clusters of molecular ions that matched ether lipids in the database with sub‐ppm mass accuracy. To structurally characterize and validate the identities of the potential lipid species, we performed structural analysis using multistage activation on the ion trap‐orbitrap instrument as well as tandem mass analysis using a quadrupole time‐of‐flight machine. Our analysis identified four ether lipid species previously reported in Archaea, and one ether lipid species that had not been described before. This uncharacterized lipid species features two head group structures composed of a trisaccharide residue carrying an uncommon sulfono group (−SO 3 ) and an inositol phosphate group. Both head groups are linked to a glycerol dialkyl glycerol tetraether core structure having isoprenoid chains with a total of 80 carbon atoms and 4 cyclopentane moieties. The shotgun lipidomics approach deployed here defines a novel workflow for exploratory lipid profiling of Archaea. Copyright © 2015 John Wiley & Sons, Ltd. |
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Structural characterization of ether lipids from the archaeon Sulfolobus islandicus by high‐resolution shotgun lipidomics |
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