Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress
Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search fo...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Pandey, Bharati [verfasserIn] |
|---|
| Format: |
Artikel |
|---|---|
| Sprache: |
Englisch |
| Erschienen: |
2015 |
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| Schlagwörter: |
HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics |
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| Übergeordnetes Werk: |
Enthalten in: Applied biochemistry and biotechnology / A - New York, NY : Springer, 1994, 175(2015), 5, Seite 2427 |
|---|---|
| Übergeordnetes Werk: |
volume:175 ; year:2015 ; number:5 ; pages:2427 |
| Links: |
|---|
| DOI / URN: |
10.1007/s12010-014-1420-2 |
|---|
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OLC1967121907 |
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| 520 | |a Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. | ||
| 650 | 4 | |a Triticum - chemistry | |
| 650 | 4 | |a Triticum - physiology | |
| 650 | 4 | |a Hordeum - physiology | |
| 650 | 4 | |a Hordeum - classification | |
| 650 | 4 | |a Plant Proteins - genetics | |
| 650 | 4 | |a HSP20 Heat-Shock Proteins - metabolism | |
| 650 | 4 | |a HSP20 Heat-Shock Proteins - genetics | |
| 650 | 4 | |a Hordeum - chemistry | |
| 650 | 4 | |a Hordeum - genetics | |
| 650 | 4 | |a Plant Proteins - metabolism | |
| 650 | 4 | |a Triticum - classification | |
| 650 | 4 | |a Plant Proteins - chemistry | |
| 650 | 4 | |a Triticum - genetics | |
| 650 | 4 | |a HSP20 Heat-Shock Proteins - chemistry | |
| 650 | 4 | |a Gene expression | |
| 650 | 4 | |a Heat shock proteins | |
| 650 | 4 | |a Barley | |
| 650 | 4 | |a Wheat | |
| 700 | 1 | |a Kaur, Amandeep |4 oth | |
| 700 | 1 | |a Gupta, Om Prakesh |4 oth | |
| 700 | 1 | |a Sharma, Indu |4 oth | |
| 700 | 1 | |a Sharma, Pradeep |4 oth | |
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10.1007/s12010-014-1420-2 doi PQ20160617 (DE-627)OLC1967121907 (DE-599)GBVOLC1967121907 (PRQ)c1820-bb3ab98832835df6e4b45770f6f8c06ce87f0c910dfd30489f8650586b4fa00c0 (KEY)0068751020150000175000502427identificationofhsp20genefamilyinwheatandbarleyand DE-627 ger DE-627 rakwb eng 570 540 660 DNB 42.00 bkl Pandey, Bharati verfasserin aut Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. Triticum - chemistry Triticum - physiology Hordeum - physiology Hordeum - classification Plant Proteins - genetics HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics Hordeum - chemistry Hordeum - genetics Plant Proteins - metabolism Triticum - classification Plant Proteins - chemistry Triticum - genetics HSP20 Heat-Shock Proteins - chemistry Gene expression Heat shock proteins Barley Wheat Kaur, Amandeep oth Gupta, Om Prakesh oth Sharma, Indu oth Sharma, Pradeep oth Enthalten in Applied biochemistry and biotechnology / A New York, NY : Springer, 1994 175(2015), 5, Seite 2427 (DE-627)182278573 (DE-600)1193054-8 (DE-576)043085105 0273-2289 nnns volume:175 year:2015 number:5 pages:2427 http://dx.doi.org/10.1007/s12010-014-1420-2 Volltext http://www.ncbi.nlm.nih.gov/pubmed/25503087 http://search.proquest.com/docview/1659893893 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_4012 42.00 AVZ AR 175 2015 5 2427 |
| spelling |
10.1007/s12010-014-1420-2 doi PQ20160617 (DE-627)OLC1967121907 (DE-599)GBVOLC1967121907 (PRQ)c1820-bb3ab98832835df6e4b45770f6f8c06ce87f0c910dfd30489f8650586b4fa00c0 (KEY)0068751020150000175000502427identificationofhsp20genefamilyinwheatandbarleyand DE-627 ger DE-627 rakwb eng 570 540 660 DNB 42.00 bkl Pandey, Bharati verfasserin aut Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. Triticum - chemistry Triticum - physiology Hordeum - physiology Hordeum - classification Plant Proteins - genetics HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics Hordeum - chemistry Hordeum - genetics Plant Proteins - metabolism Triticum - classification Plant Proteins - chemistry Triticum - genetics HSP20 Heat-Shock Proteins - chemistry Gene expression Heat shock proteins Barley Wheat Kaur, Amandeep oth Gupta, Om Prakesh oth Sharma, Indu oth Sharma, Pradeep oth Enthalten in Applied biochemistry and biotechnology / A New York, NY : Springer, 1994 175(2015), 5, Seite 2427 (DE-627)182278573 (DE-600)1193054-8 (DE-576)043085105 0273-2289 nnns volume:175 year:2015 number:5 pages:2427 http://dx.doi.org/10.1007/s12010-014-1420-2 Volltext http://www.ncbi.nlm.nih.gov/pubmed/25503087 http://search.proquest.com/docview/1659893893 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_4012 42.00 AVZ AR 175 2015 5 2427 |
| allfields_unstemmed |
10.1007/s12010-014-1420-2 doi PQ20160617 (DE-627)OLC1967121907 (DE-599)GBVOLC1967121907 (PRQ)c1820-bb3ab98832835df6e4b45770f6f8c06ce87f0c910dfd30489f8650586b4fa00c0 (KEY)0068751020150000175000502427identificationofhsp20genefamilyinwheatandbarleyand DE-627 ger DE-627 rakwb eng 570 540 660 DNB 42.00 bkl Pandey, Bharati verfasserin aut Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. Triticum - chemistry Triticum - physiology Hordeum - physiology Hordeum - classification Plant Proteins - genetics HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics Hordeum - chemistry Hordeum - genetics Plant Proteins - metabolism Triticum - classification Plant Proteins - chemistry Triticum - genetics HSP20 Heat-Shock Proteins - chemistry Gene expression Heat shock proteins Barley Wheat Kaur, Amandeep oth Gupta, Om Prakesh oth Sharma, Indu oth Sharma, Pradeep oth Enthalten in Applied biochemistry and biotechnology / A New York, NY : Springer, 1994 175(2015), 5, Seite 2427 (DE-627)182278573 (DE-600)1193054-8 (DE-576)043085105 0273-2289 nnns volume:175 year:2015 number:5 pages:2427 http://dx.doi.org/10.1007/s12010-014-1420-2 Volltext http://www.ncbi.nlm.nih.gov/pubmed/25503087 http://search.proquest.com/docview/1659893893 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_4012 42.00 AVZ AR 175 2015 5 2427 |
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10.1007/s12010-014-1420-2 doi PQ20160617 (DE-627)OLC1967121907 (DE-599)GBVOLC1967121907 (PRQ)c1820-bb3ab98832835df6e4b45770f6f8c06ce87f0c910dfd30489f8650586b4fa00c0 (KEY)0068751020150000175000502427identificationofhsp20genefamilyinwheatandbarleyand DE-627 ger DE-627 rakwb eng 570 540 660 DNB 42.00 bkl Pandey, Bharati verfasserin aut Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. Triticum - chemistry Triticum - physiology Hordeum - physiology Hordeum - classification Plant Proteins - genetics HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics Hordeum - chemistry Hordeum - genetics Plant Proteins - metabolism Triticum - classification Plant Proteins - chemistry Triticum - genetics HSP20 Heat-Shock Proteins - chemistry Gene expression Heat shock proteins Barley Wheat Kaur, Amandeep oth Gupta, Om Prakesh oth Sharma, Indu oth Sharma, Pradeep oth Enthalten in Applied biochemistry and biotechnology / A New York, NY : Springer, 1994 175(2015), 5, Seite 2427 (DE-627)182278573 (DE-600)1193054-8 (DE-576)043085105 0273-2289 nnns volume:175 year:2015 number:5 pages:2427 http://dx.doi.org/10.1007/s12010-014-1420-2 Volltext http://www.ncbi.nlm.nih.gov/pubmed/25503087 http://search.proquest.com/docview/1659893893 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_4012 42.00 AVZ AR 175 2015 5 2427 |
| allfieldsSound |
10.1007/s12010-014-1420-2 doi PQ20160617 (DE-627)OLC1967121907 (DE-599)GBVOLC1967121907 (PRQ)c1820-bb3ab98832835df6e4b45770f6f8c06ce87f0c910dfd30489f8650586b4fa00c0 (KEY)0068751020150000175000502427identificationofhsp20genefamilyinwheatandbarleyand DE-627 ger DE-627 rakwb eng 570 540 660 DNB 42.00 bkl Pandey, Bharati verfasserin aut Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress 2015 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. Triticum - chemistry Triticum - physiology Hordeum - physiology Hordeum - classification Plant Proteins - genetics HSP20 Heat-Shock Proteins - metabolism HSP20 Heat-Shock Proteins - genetics Hordeum - chemistry Hordeum - genetics Plant Proteins - metabolism Triticum - classification Plant Proteins - chemistry Triticum - genetics HSP20 Heat-Shock Proteins - chemistry Gene expression Heat shock proteins Barley Wheat Kaur, Amandeep oth Gupta, Om Prakesh oth Sharma, Indu oth Sharma, Pradeep oth Enthalten in Applied biochemistry and biotechnology / A New York, NY : Springer, 1994 175(2015), 5, Seite 2427 (DE-627)182278573 (DE-600)1193054-8 (DE-576)043085105 0273-2289 nnns volume:175 year:2015 number:5 pages:2427 http://dx.doi.org/10.1007/s12010-014-1420-2 Volltext http://www.ncbi.nlm.nih.gov/pubmed/25503087 http://search.proquest.com/docview/1659893893 GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_4012 42.00 AVZ AR 175 2015 5 2427 |
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identification of hsp20 gene family in wheat and barley and their differential expression profiling under heat stress |
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Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress |
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Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. |
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Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. |
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Small heat shock proteins (sHSPs) are chaperones that play an important role in various developmental, biotic and abiotic stresses. The sHSP family possess a conserved domain of approximately 80 to 100 amino acids called alpha-crystalline domain (ACD), flanked by N- and C-terminal regions. Search for complete proteomes and expressed sequenced tag (EST) database of wheat and barley using Hidden Markov Model and BLAST algorithm was conducted. Here, we report genome-wide identification and characterization of 27 newly TaHSP20 candidate genes in wheat and 13 HvHSP20 in barley, describing structures, phylogenetic relationships, conserved protein motifs, and expression patterns. The structural analysis highlights that this gene family possesses a conserved ACD region at the C-terminal. Detailed pattern analysis of HSP20 revealed presence of P-G doublet and I/V/L-X-I/V/L motif that helps in oligomerization. Identification of conserved motif sequences of wheat and barley HSP20 strongly supported their identity as sHSP families. This study illustrates for the first time 3D model prediction of full-length wheat HSP20 (TaHSP20) protein and ACD region. Digital expression analysis was also carried out in order to reveal a widespread distribution of the sHSP family genes at various developmental stages of wheat and barley. In addition, five selected transcripts of both wheat and barley were validated for their expression profile under 35 °C and 42 °C heat stress conditions. Results indicate up-regulation of all the transcripts under heat stress condition except TaCBM38894 candidate, which showed down-regulation in wheat. |
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Identification of HSP20 gene family in wheat and barley and their differential expression profiling under heat stress |
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