De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis
The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of s...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Qi [verfasserIn] |
|---|
| Format: |
Artikel |
|---|---|
| Sprache: |
Englisch |
| Erschienen: |
2017 |
|---|
| Schlagwörter: |
|---|
| Übergeordnetes Werk: |
Enthalten in: Journal of coastal research - Fort Lauderdale, Fla. : CERF, 1985, 33(2017), 4, Seite 931 |
|---|---|
| Übergeordnetes Werk: |
volume:33 ; year:2017 ; number:4 ; pages:931 |
| Links: |
|---|
| DOI / URN: |
10.2112/JCOASTRES-D-16-00076.1 |
|---|
| Katalog-ID: |
OLC199617388X |
|---|
| LEADER | 01000caa a2200265 4500 | ||
|---|---|---|---|
| 001 | OLC199617388X | ||
| 003 | DE-627 | ||
| 005 | 20220216152739.0 | ||
| 007 | tu | ||
| 008 | 170901s2017 xx ||||| 00| ||eng c | ||
| 024 | 7 | |a 10.2112/JCOASTRES-D-16-00076.1 |2 doi | |
| 028 | 5 | 2 | |a PQ20170901 |
| 035 | |a (DE-627)OLC199617388X | ||
| 035 | |a (DE-599)GBVOLC199617388X | ||
| 035 | |a (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 | ||
| 035 | |a (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 082 | 0 | 4 | |a 550 |a 530 |q DNB |
| 084 | |a BIODIV |2 fid | ||
| 084 | |a 38.48 |2 bkl | ||
| 100 | 0 | |a Qi |e verfasserin |4 aut | |
| 245 | 1 | 3 | |a De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| 264 | 1 | |c 2017 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a ohne Hilfsmittel zu benutzen |b n |2 rdamedia | ||
| 338 | |a Band |b nc |2 rdacarrier | ||
| 520 | |a The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. | ||
| 650 | 4 | |a Genomes | |
| 650 | 4 | |a Muscle contraction | |
| 650 | 4 | |a Software | |
| 650 | 4 | |a Pathology | |
| 650 | 4 | |a Coastal environments | |
| 650 | 4 | |a Quality | |
| 650 | 4 | |a Nucleotide sequence | |
| 650 | 4 | |a Physiology | |
| 650 | 4 | |a Chelating agents | |
| 650 | 4 | |a Aquaculture | |
| 650 | 4 | |a Categories | |
| 650 | 4 | |a Knowledge representation | |
| 650 | 4 | |a Biological activity | |
| 650 | 4 | |a Gene expression | |
| 650 | 4 | |a Ecology | |
| 650 | 4 | |a Computer programs | |
| 650 | 4 | |a Genes | |
| 650 | 4 | |a Libraries | |
| 650 | 4 | |a Ontology | |
| 650 | 4 | |a Estuarine environments | |
| 650 | 4 | |a Simple sequence repeats | |
| 650 | 4 | |a Brackishwater environment | |
| 650 | 4 | |a Species | |
| 650 | 4 | |a Toxicology | |
| 650 | 4 | |a Phylogenetics | |
| 650 | 4 | |a Data bases | |
| 650 | 4 | |a Coasts | |
| 650 | 4 | |a Base pairs | |
| 650 | 4 | |a Biosynthesis | |
| 650 | 4 | |a Fields | |
| 650 | 4 | |a Pathways | |
| 650 | 4 | |a Immunology | |
| 650 | 4 | |a Estuaries | |
| 650 | 4 | |a Encyclopedias | |
| 650 | 4 | |a Deoxyribonucleic acid--DNA | |
| 650 | 4 | |a Muscles | |
| 650 | 4 | |a Cloning | |
| 650 | 4 | |a Assembly | |
| 650 | 4 | |a Immunity | |
| 650 | 4 | |a Nucleotides | |
| 650 | 4 | |a Databases | |
| 650 | 4 | |a Encyclopaedias | |
| 650 | 4 | |a Single-nucleotide polymorphism | |
| 650 | 4 | |a Length | |
| 650 | 4 | |a Fatty acids | |
| 650 | 4 | |a Sequencing | |
| 650 | 4 | |a Proteins | |
| 650 | 4 | |a Metabolism | |
| 773 | 0 | 8 | |i Enthalten in |t Journal of coastal research |d Fort Lauderdale, Fla. : CERF, 1985 |g 33(2017), 4, Seite 931 |w (DE-627)129194530 |w (DE-600)53639-8 |w (DE-576)9129194539 |x 0749-0208 |7 nnns |
| 773 | 1 | 8 | |g volume:33 |g year:2017 |g number:4 |g pages:931 |
| 856 | 4 | 1 | |u http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 |3 Volltext |
| 856 | 4 | 2 | |u https://search.proquest.com/docview/1922436841 |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a SYSFLAG_A | ||
| 912 | |a GBV_OLC | ||
| 912 | |a FID-BIODIV | ||
| 912 | |a SSG-OLC-PHY | ||
| 912 | |a SSG-OLC-GEO | ||
| 912 | |a SSG-OPC-GGO | ||
| 912 | |a GBV_ILN_22 | ||
| 912 | |a GBV_ILN_23 | ||
| 912 | |a GBV_ILN_70 | ||
| 912 | |a GBV_ILN_183 | ||
| 912 | |a GBV_ILN_4082 | ||
| 936 | b | k | |a 38.48 |q AVZ |
| 951 | |a AR | ||
| 952 | |d 33 |j 2017 |e 4 |h 931 | ||
| author_variant |
q |
|---|---|
| matchkey_str |
article:07490208:2017----::eoosebyncaatrztootasrpoenoaimslsfhplc |
| hierarchy_sort_str |
2017 |
| bklnumber |
38.48 |
| publishDate |
2017 |
| allfields |
10.2112/JCOASTRES-D-16-00076.1 doi PQ20170901 (DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso DE-627 ger DE-627 rakwb eng 550 530 DNB BIODIV fid 38.48 bkl Qi verfasserin aut De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis 2017 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism Enthalten in Journal of coastal research Fort Lauderdale, Fla. : CERF, 1985 33(2017), 4, Seite 931 (DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 0749-0208 nnns volume:33 year:2017 number:4 pages:931 http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 Volltext https://search.proquest.com/docview/1922436841 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 38.48 AVZ AR 33 2017 4 931 |
| spelling |
10.2112/JCOASTRES-D-16-00076.1 doi PQ20170901 (DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso DE-627 ger DE-627 rakwb eng 550 530 DNB BIODIV fid 38.48 bkl Qi verfasserin aut De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis 2017 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism Enthalten in Journal of coastal research Fort Lauderdale, Fla. : CERF, 1985 33(2017), 4, Seite 931 (DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 0749-0208 nnns volume:33 year:2017 number:4 pages:931 http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 Volltext https://search.proquest.com/docview/1922436841 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 38.48 AVZ AR 33 2017 4 931 |
| allfields_unstemmed |
10.2112/JCOASTRES-D-16-00076.1 doi PQ20170901 (DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso DE-627 ger DE-627 rakwb eng 550 530 DNB BIODIV fid 38.48 bkl Qi verfasserin aut De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis 2017 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism Enthalten in Journal of coastal research Fort Lauderdale, Fla. : CERF, 1985 33(2017), 4, Seite 931 (DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 0749-0208 nnns volume:33 year:2017 number:4 pages:931 http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 Volltext https://search.proquest.com/docview/1922436841 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 38.48 AVZ AR 33 2017 4 931 |
| allfieldsGer |
10.2112/JCOASTRES-D-16-00076.1 doi PQ20170901 (DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso DE-627 ger DE-627 rakwb eng 550 530 DNB BIODIV fid 38.48 bkl Qi verfasserin aut De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis 2017 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism Enthalten in Journal of coastal research Fort Lauderdale, Fla. : CERF, 1985 33(2017), 4, Seite 931 (DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 0749-0208 nnns volume:33 year:2017 number:4 pages:931 http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 Volltext https://search.proquest.com/docview/1922436841 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 38.48 AVZ AR 33 2017 4 931 |
| allfieldsSound |
10.2112/JCOASTRES-D-16-00076.1 doi PQ20170901 (DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso DE-627 ger DE-627 rakwb eng 550 530 DNB BIODIV fid 38.48 bkl Qi verfasserin aut De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis 2017 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism Enthalten in Journal of coastal research Fort Lauderdale, Fla. : CERF, 1985 33(2017), 4, Seite 931 (DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 0749-0208 nnns volume:33 year:2017 number:4 pages:931 http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 Volltext https://search.proquest.com/docview/1922436841 GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 38.48 AVZ AR 33 2017 4 931 |
| language |
English |
| source |
Enthalten in Journal of coastal research 33(2017), 4, Seite 931 volume:33 year:2017 number:4 pages:931 |
| sourceStr |
Enthalten in Journal of coastal research 33(2017), 4, Seite 931 volume:33 year:2017 number:4 pages:931 |
| format_phy_str_mv |
Article |
| institution |
findex.gbv.de |
| topic_facet |
Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism |
| dewey-raw |
550 |
| isfreeaccess_bool |
false |
| container_title |
Journal of coastal research |
| authorswithroles_txt_mv |
Qi @@aut@@ |
| publishDateDaySort_date |
2017-01-01T00:00:00Z |
| hierarchy_top_id |
129194530 |
| dewey-sort |
3550 |
| id |
OLC199617388X |
| language_de |
englisch |
| fullrecord |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a2200265 4500</leader><controlfield tag="001">OLC199617388X</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20220216152739.0</controlfield><controlfield tag="007">tu</controlfield><controlfield tag="008">170901s2017 xx ||||| 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.2112/JCOASTRES-D-16-00076.1</subfield><subfield code="2">doi</subfield></datafield><datafield tag="028" ind1="5" ind2="2"><subfield code="a">PQ20170901</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)OLC199617388X</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)GBVOLC199617388X</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="082" ind1="0" ind2="4"><subfield code="a">550</subfield><subfield code="a">530</subfield><subfield code="q">DNB</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">BIODIV</subfield><subfield code="2">fid</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">38.48</subfield><subfield code="2">bkl</subfield></datafield><datafield tag="100" ind1="0" ind2=" "><subfield code="a">Qi</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="3"><subfield code="a">De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2017</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">ohne Hilfsmittel zu benutzen</subfield><subfield code="b">n</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Band</subfield><subfield code="b">nc</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Genomes</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Muscle contraction</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Software</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Pathology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Coastal environments</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Quality</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nucleotide sequence</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Physiology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Chelating agents</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Aquaculture</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Categories</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Knowledge representation</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Biological activity</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Gene expression</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Ecology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Computer programs</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Genes</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Libraries</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Ontology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Estuarine environments</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Simple sequence repeats</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Brackishwater environment</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Species</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Toxicology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Phylogenetics</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Data bases</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Coasts</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Base pairs</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Biosynthesis</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Fields</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Pathways</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Immunology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Estuaries</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Encyclopedias</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Deoxyribonucleic acid--DNA</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Muscles</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Cloning</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Assembly</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Immunity</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nucleotides</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Databases</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Encyclopaedias</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Single-nucleotide polymorphism</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Length</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Fatty acids</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Sequencing</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Proteins</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Metabolism</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">Enthalten in</subfield><subfield code="t">Journal of coastal research</subfield><subfield code="d">Fort Lauderdale, Fla. : CERF, 1985</subfield><subfield code="g">33(2017), 4, Seite 931</subfield><subfield code="w">(DE-627)129194530</subfield><subfield code="w">(DE-600)53639-8</subfield><subfield code="w">(DE-576)9129194539</subfield><subfield code="x">0749-0208</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:33</subfield><subfield code="g">year:2017</subfield><subfield code="g">number:4</subfield><subfield code="g">pages:931</subfield></datafield><datafield tag="856" ind1="4" ind2="1"><subfield code="u">http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1</subfield><subfield code="3">Volltext</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="u">https://search.proquest.com/docview/1922436841</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_OLC</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">FID-BIODIV</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OLC-PHY</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OLC-GEO</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OPC-GGO</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_22</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_23</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_70</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_183</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4082</subfield></datafield><datafield tag="936" ind1="b" ind2="k"><subfield code="a">38.48</subfield><subfield code="q">AVZ</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">33</subfield><subfield code="j">2017</subfield><subfield code="e">4</subfield><subfield code="h">931</subfield></datafield></record></collection>
|
| author |
Qi |
| spellingShingle |
Qi ddc 550 fid BIODIV bkl 38.48 misc Genomes misc Muscle contraction misc Software misc Pathology misc Coastal environments misc Quality misc Nucleotide sequence misc Physiology misc Chelating agents misc Aquaculture misc Categories misc Knowledge representation misc Biological activity misc Gene expression misc Ecology misc Computer programs misc Genes misc Libraries misc Ontology misc Estuarine environments misc Simple sequence repeats misc Brackishwater environment misc Species misc Toxicology misc Phylogenetics misc Data bases misc Coasts misc Base pairs misc Biosynthesis misc Fields misc Pathways misc Immunology misc Estuaries misc Encyclopedias misc Deoxyribonucleic acid--DNA misc Muscles misc Cloning misc Assembly misc Immunity misc Nucleotides misc Databases misc Encyclopaedias misc Single-nucleotide polymorphism misc Length misc Fatty acids misc Sequencing misc Proteins misc Metabolism De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| authorStr |
Qi |
| ppnlink_with_tag_str_mv |
@@773@@(DE-627)129194530 |
| format |
Article |
| dewey-ones |
550 - Earth sciences 530 - Physics |
| delete_txt_mv |
keep |
| author_role |
aut |
| collection |
OLC |
| remote_str |
false |
| illustrated |
Not Illustrated |
| issn |
0749-0208 |
| topic_title |
550 530 DNB BIODIV fid 38.48 bkl De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis Genomes Muscle contraction Software Pathology Coastal environments Quality Nucleotide sequence Physiology Chelating agents Aquaculture Categories Knowledge representation Biological activity Gene expression Ecology Computer programs Genes Libraries Ontology Estuarine environments Simple sequence repeats Brackishwater environment Species Toxicology Phylogenetics Data bases Coasts Base pairs Biosynthesis Fields Pathways Immunology Estuaries Encyclopedias Deoxyribonucleic acid--DNA Muscles Cloning Assembly Immunity Nucleotides Databases Encyclopaedias Single-nucleotide polymorphism Length Fatty acids Sequencing Proteins Metabolism |
| topic |
ddc 550 fid BIODIV bkl 38.48 misc Genomes misc Muscle contraction misc Software misc Pathology misc Coastal environments misc Quality misc Nucleotide sequence misc Physiology misc Chelating agents misc Aquaculture misc Categories misc Knowledge representation misc Biological activity misc Gene expression misc Ecology misc Computer programs misc Genes misc Libraries misc Ontology misc Estuarine environments misc Simple sequence repeats misc Brackishwater environment misc Species misc Toxicology misc Phylogenetics misc Data bases misc Coasts misc Base pairs misc Biosynthesis misc Fields misc Pathways misc Immunology misc Estuaries misc Encyclopedias misc Deoxyribonucleic acid--DNA misc Muscles misc Cloning misc Assembly misc Immunity misc Nucleotides misc Databases misc Encyclopaedias misc Single-nucleotide polymorphism misc Length misc Fatty acids misc Sequencing misc Proteins misc Metabolism |
| topic_unstemmed |
ddc 550 fid BIODIV bkl 38.48 misc Genomes misc Muscle contraction misc Software misc Pathology misc Coastal environments misc Quality misc Nucleotide sequence misc Physiology misc Chelating agents misc Aquaculture misc Categories misc Knowledge representation misc Biological activity misc Gene expression misc Ecology misc Computer programs misc Genes misc Libraries misc Ontology misc Estuarine environments misc Simple sequence repeats misc Brackishwater environment misc Species misc Toxicology misc Phylogenetics misc Data bases misc Coasts misc Base pairs misc Biosynthesis misc Fields misc Pathways misc Immunology misc Estuaries misc Encyclopedias misc Deoxyribonucleic acid--DNA misc Muscles misc Cloning misc Assembly misc Immunity misc Nucleotides misc Databases misc Encyclopaedias misc Single-nucleotide polymorphism misc Length misc Fatty acids misc Sequencing misc Proteins misc Metabolism |
| topic_browse |
ddc 550 fid BIODIV bkl 38.48 misc Genomes misc Muscle contraction misc Software misc Pathology misc Coastal environments misc Quality misc Nucleotide sequence misc Physiology misc Chelating agents misc Aquaculture misc Categories misc Knowledge representation misc Biological activity misc Gene expression misc Ecology misc Computer programs misc Genes misc Libraries misc Ontology misc Estuarine environments misc Simple sequence repeats misc Brackishwater environment misc Species misc Toxicology misc Phylogenetics misc Data bases misc Coasts misc Base pairs misc Biosynthesis misc Fields misc Pathways misc Immunology misc Estuaries misc Encyclopedias misc Deoxyribonucleic acid--DNA misc Muscles misc Cloning misc Assembly misc Immunity misc Nucleotides misc Databases misc Encyclopaedias misc Single-nucleotide polymorphism misc Length misc Fatty acids misc Sequencing misc Proteins misc Metabolism |
| format_facet |
Aufsätze Gedruckte Aufsätze |
| format_main_str_mv |
Text Zeitschrift/Artikel |
| carriertype_str_mv |
nc |
| hierarchy_parent_title |
Journal of coastal research |
| hierarchy_parent_id |
129194530 |
| dewey-tens |
550 - Earth sciences & geology 530 - Physics |
| hierarchy_top_title |
Journal of coastal research |
| isfreeaccess_txt |
false |
| familylinks_str_mv |
(DE-627)129194530 (DE-600)53639-8 (DE-576)9129194539 |
| title |
De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| ctrlnum |
(DE-627)OLC199617388X (DE-599)GBVOLC199617388X (PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070 (KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso |
| title_full |
De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| author_sort |
Qi |
| journal |
Journal of coastal research |
| journalStr |
Journal of coastal research |
| lang_code |
eng |
| isOA_bool |
false |
| dewey-hundreds |
500 - Science |
| recordtype |
marc |
| publishDateSort |
2017 |
| contenttype_str_mv |
txt |
| container_start_page |
931 |
| author_browse |
Qi |
| container_volume |
33 |
| class |
550 530 DNB BIODIV fid 38.48 bkl |
| format_se |
Aufsätze |
| author-letter |
Qi |
| doi_str_mv |
10.2112/JCOASTRES-D-16-00076.1 |
| dewey-full |
550 530 |
| title_sort |
novo assembly and characterization of transcriptome in somatic muscles of the polychaete perinereis aibuhitensis |
| title_auth |
De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| abstract |
The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. |
| abstractGer |
The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. |
| abstract_unstemmed |
The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc. |
| collection_details |
GBV_USEFLAG_A SYSFLAG_A GBV_OLC FID-BIODIV SSG-OLC-PHY SSG-OLC-GEO SSG-OPC-GGO GBV_ILN_22 GBV_ILN_23 GBV_ILN_70 GBV_ILN_183 GBV_ILN_4082 |
| container_issue |
4 |
| title_short |
De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis |
| url |
http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1 https://search.proquest.com/docview/1922436841 |
| remote_bool |
false |
| ppnlink |
129194530 |
| mediatype_str_mv |
n |
| isOA_txt |
false |
| hochschulschrift_bool |
false |
| doi_str |
10.2112/JCOASTRES-D-16-00076.1 |
| up_date |
2024-07-04T00:04:10.872Z |
| _version_ |
1803604670151655424 |
| fullrecord_marcxml |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a2200265 4500</leader><controlfield tag="001">OLC199617388X</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20220216152739.0</controlfield><controlfield tag="007">tu</controlfield><controlfield tag="008">170901s2017 xx ||||| 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.2112/JCOASTRES-D-16-00076.1</subfield><subfield code="2">doi</subfield></datafield><datafield tag="028" ind1="5" ind2="2"><subfield code="a">PQ20170901</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)OLC199617388X</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-599)GBVOLC199617388X</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(PRQ)c1406-fa6ea77409974ce6662ca9a24556ada8d322baacf5471bdf1a021beb482154070</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(KEY)0141275220170000033000400931novoassemblyandcharacterizationoftranscriptomeinso</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="082" ind1="0" ind2="4"><subfield code="a">550</subfield><subfield code="a">530</subfield><subfield code="q">DNB</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">BIODIV</subfield><subfield code="2">fid</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">38.48</subfield><subfield code="2">bkl</subfield></datafield><datafield tag="100" ind1="0" ind2=" "><subfield code="a">Qi</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="3"><subfield code="a">De Novo Assembly and Characterization of Transcriptome in Somatic Muscles of the Polychaete Perinereis aibuhitensis</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2017</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">ohne Hilfsmittel zu benutzen</subfield><subfield code="b">n</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Band</subfield><subfield code="b">nc</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">The polychaete Perinereis aibuhitensis is a common species distributed throughout coastal and estuarine regions with growing importance in aquaculture. However, the knowledge of molecular mechanism of physiology and pathology of this polychaete has been limited. In this study, the transcriptome of somatic muscles of P. aibuhitensis was sequenced using the Illumina HisSeq 2000 sequencing platform. As a result, 53,204 unigenes with a length of 63,967,647 base pairs (bp) were obtained, among which 29,797, 9951, and 24,844 unigenes were matched in the nonredundant, nucleotide, and Swiss-Prot databases, respectively. Gene ontology analysis revealed that 9938 unigenes were classified into three categories: biological process, cellular component, and molecular function. In addition, 21,756 unigenes were grouped into 257 annotated pathways in the Kyoto Encyclopedia of Genes and Genomes database. More importantly, genes involved in fatty acid biosynthesis and metabolism, muscle contraction, and innate immunity of P. aibuhitensis were analyzed in detail. In addition, 4682 simple sequence repeats and 32,202 candidate single nucleotide polymorphisms were identified from the P. aibuhitensis transcriptome. These data facilitate further studies of the physiology and molecular response of P. aibuhitensis. Furthermore, these results contribute to the molecular basis for coastal research worldwide, using P. aibuhitensis as a model animal in the fields of environmental ecology, toxicology, etc.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Genomes</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Muscle contraction</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Software</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Pathology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Coastal environments</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Quality</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nucleotide sequence</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Physiology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Chelating agents</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Aquaculture</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Categories</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Knowledge representation</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Biological activity</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Gene expression</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Ecology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Computer programs</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Genes</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Libraries</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Ontology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Estuarine environments</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Simple sequence repeats</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Brackishwater environment</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Species</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Toxicology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Phylogenetics</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Data bases</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Coasts</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Base pairs</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Biosynthesis</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Fields</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Pathways</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Immunology</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Estuaries</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Encyclopedias</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Deoxyribonucleic acid--DNA</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Muscles</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Cloning</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Assembly</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Immunity</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Nucleotides</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Databases</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Encyclopaedias</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Single-nucleotide polymorphism</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Length</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Fatty acids</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Sequencing</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Proteins</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Metabolism</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">Enthalten in</subfield><subfield code="t">Journal of coastal research</subfield><subfield code="d">Fort Lauderdale, Fla. : CERF, 1985</subfield><subfield code="g">33(2017), 4, Seite 931</subfield><subfield code="w">(DE-627)129194530</subfield><subfield code="w">(DE-600)53639-8</subfield><subfield code="w">(DE-576)9129194539</subfield><subfield code="x">0749-0208</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:33</subfield><subfield code="g">year:2017</subfield><subfield code="g">number:4</subfield><subfield code="g">pages:931</subfield></datafield><datafield tag="856" ind1="4" ind2="1"><subfield code="u">http://dx.doi.org/10.2112/JCOASTRES-D-16-00076.1</subfield><subfield code="3">Volltext</subfield></datafield><datafield tag="856" ind1="4" ind2="2"><subfield code="u">https://search.proquest.com/docview/1922436841</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_OLC</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">FID-BIODIV</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OLC-PHY</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OLC-GEO</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SSG-OPC-GGO</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_22</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_23</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_70</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_183</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_ILN_4082</subfield></datafield><datafield tag="936" ind1="b" ind2="k"><subfield code="a">38.48</subfield><subfield code="q">AVZ</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">33</subfield><subfield code="j">2017</subfield><subfield code="e">4</subfield><subfield code="h">931</subfield></datafield></record></collection>
|
| score |
7.39894 |