Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus
Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Yu, Yanhua [verfasserIn] |
|---|
| Format: |
Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2007 |
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| Schlagwörter: |
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| Anmerkung: |
© Springer Science+Business Media B.V. 2007 |
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| Übergeordnetes Werk: |
Enthalten in: Plant growth regulation - Kluwer Academic Publishers, 1982, 52(2007), 2 vom: 27. Apr., Seite 101-110 |
|---|---|
| Übergeordnetes Werk: |
volume:52 ; year:2007 ; number:2 ; day:27 ; month:04 ; pages:101-110 |
| Links: |
|---|
| DOI / URN: |
10.1007/s10725-007-9165-3 |
|---|
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OLC2039352430 |
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| 520 | |a Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here, we present a comparative genomic analysis of the CIPK gene family in Arabidopsis and poplar, a model tree species. Twenty-seven potential CIPKs were identified from poplar using genome-wide analysis. Like the CIPK gene family from Arabidopsis, CIPK genes from poplar were also divided into intron-free and intron-harboring groups. In the intron-harboring group, the intron distribution of CIPKs is rather conserved during the genome evolutionary process. Many homologous gene pairs were found in the CIPK gene family, indicating duplication events might contribute to the amplification of this gene family. The phylogenetic comparison of CIPKs in combination with intron distribution analysis revealed that CIPK genes from both Arabidopsis and poplar might have an ancient origin, which formed earlier than the separation of these two eudicot species. Our genomic and bioinformatic analysis will provide an important foundation for further functional dissection of the CBL-CIPK signaling network in poplars. | ||
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10.1007/s10725-007-9165-3 doi (DE-627)OLC2039352430 (DE-He213)s10725-007-9165-3-p DE-627 ger DE-627 rakwb eng 580 333.7 VZ 12 ssgn Yu, Yanhua verfasserin aut Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus 2007 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2007 Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here, we present a comparative genomic analysis of the CIPK gene family in Arabidopsis and poplar, a model tree species. Twenty-seven potential CIPKs were identified from poplar using genome-wide analysis. Like the CIPK gene family from Arabidopsis, CIPK genes from poplar were also divided into intron-free and intron-harboring groups. In the intron-harboring group, the intron distribution of CIPKs is rather conserved during the genome evolutionary process. Many homologous gene pairs were found in the CIPK gene family, indicating duplication events might contribute to the amplification of this gene family. The phylogenetic comparison of CIPKs in combination with intron distribution analysis revealed that CIPK genes from both Arabidopsis and poplar might have an ancient origin, which formed earlier than the separation of these two eudicot species. Our genomic and bioinformatic analysis will provide an important foundation for further functional dissection of the CBL-CIPK signaling network in poplars. Arabidopsis CBL CIPK Comparative genomic analysis Phylogenetic relationship Poplar Xia, Xinli aut Yin, Weilun aut Zhang, Hechen aut Enthalten in Plant growth regulation Kluwer Academic Publishers, 1982 52(2007), 2 vom: 27. Apr., Seite 101-110 (DE-627)130652423 (DE-600)843025-1 (DE-576)016203275 0167-6903 nnns volume:52 year:2007 number:2 day:27 month:04 pages:101-110 https://doi.org/10.1007/s10725-007-9165-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-FOR GBV_ILN_31 GBV_ILN_65 GBV_ILN_70 GBV_ILN_211 GBV_ILN_285 GBV_ILN_4012 GBV_ILN_4219 GBV_ILN_4307 AR 52 2007 2 27 04 101-110 |
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Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus |
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Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus |
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Yu, Yanhua |
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Plant growth regulation |
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Plant growth regulation |
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Yu, Yanhua Xia, Xinli Yin, Weilun Zhang, Hechen |
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comparative genomic analysis of cipk gene family in arabidopsis and populus |
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Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus |
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Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here, we present a comparative genomic analysis of the CIPK gene family in Arabidopsis and poplar, a model tree species. Twenty-seven potential CIPKs were identified from poplar using genome-wide analysis. Like the CIPK gene family from Arabidopsis, CIPK genes from poplar were also divided into intron-free and intron-harboring groups. In the intron-harboring group, the intron distribution of CIPKs is rather conserved during the genome evolutionary process. Many homologous gene pairs were found in the CIPK gene family, indicating duplication events might contribute to the amplification of this gene family. The phylogenetic comparison of CIPKs in combination with intron distribution analysis revealed that CIPK genes from both Arabidopsis and poplar might have an ancient origin, which formed earlier than the separation of these two eudicot species. Our genomic and bioinformatic analysis will provide an important foundation for further functional dissection of the CBL-CIPK signaling network in poplars. © Springer Science+Business Media B.V. 2007 |
| abstractGer |
Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here, we present a comparative genomic analysis of the CIPK gene family in Arabidopsis and poplar, a model tree species. Twenty-seven potential CIPKs were identified from poplar using genome-wide analysis. Like the CIPK gene family from Arabidopsis, CIPK genes from poplar were also divided into intron-free and intron-harboring groups. In the intron-harboring group, the intron distribution of CIPKs is rather conserved during the genome evolutionary process. Many homologous gene pairs were found in the CIPK gene family, indicating duplication events might contribute to the amplification of this gene family. The phylogenetic comparison of CIPKs in combination with intron distribution analysis revealed that CIPK genes from both Arabidopsis and poplar might have an ancient origin, which formed earlier than the separation of these two eudicot species. Our genomic and bioinformatic analysis will provide an important foundation for further functional dissection of the CBL-CIPK signaling network in poplars. © Springer Science+Business Media B.V. 2007 |
| abstract_unstemmed |
Abstract Calcium serves as a second messenger in various signal transduction pathways in plants. CBL-interacting protein kinases (CIPKs), which have a variety of functions, are involved in calcium signal transduction. Previous, the studies on CIPK family members focused on Arabidopsis and rice. Here, we present a comparative genomic analysis of the CIPK gene family in Arabidopsis and poplar, a model tree species. Twenty-seven potential CIPKs were identified from poplar using genome-wide analysis. Like the CIPK gene family from Arabidopsis, CIPK genes from poplar were also divided into intron-free and intron-harboring groups. In the intron-harboring group, the intron distribution of CIPKs is rather conserved during the genome evolutionary process. Many homologous gene pairs were found in the CIPK gene family, indicating duplication events might contribute to the amplification of this gene family. The phylogenetic comparison of CIPKs in combination with intron distribution analysis revealed that CIPK genes from both Arabidopsis and poplar might have an ancient origin, which formed earlier than the separation of these two eudicot species. Our genomic and bioinformatic analysis will provide an important foundation for further functional dissection of the CBL-CIPK signaling network in poplars. © Springer Science+Business Media B.V. 2007 |
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Comparative genomic analysis of CIPK gene family in Arabidopsis and Populus |
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