Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles
Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Wakabayashi, Masayuki [verfasserIn] |
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| Format: |
Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2011 |
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| Schlagwörter: |
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| Anmerkung: |
© Springer Science+Business Media B.V. 2011 |
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| Übergeordnetes Werk: |
Enthalten in: Biodegradation - Springer Netherlands, 1990, 23(2011), 1 vom: 17. Juni, Seite 93-105 |
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| Übergeordnetes Werk: |
volume:23 ; year:2011 ; number:1 ; day:17 ; month:06 ; pages:93-105 |
| Links: |
|---|
| DOI / URN: |
10.1007/s10532-011-9489-6 |
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OLC2050403070 |
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| 520 | |a Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. | ||
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10.1007/s10532-011-9489-6 doi (DE-627)OLC2050403070 (DE-He213)s10532-011-9489-6-p DE-627 ger DE-627 rakwb eng 570 610 VZ 12 ssgn Wakabayashi, Masayuki verfasserin aut Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles 2011 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2011 Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. Seaweed Degradation Alginate lyase Cellulase Sakatoku, Akihiro aut Noda, Fumio aut Noda, Minoru aut Tanaka, Daisuke aut Nakamura, Shogo aut Enthalten in Biodegradation Springer Netherlands, 1990 23(2011), 1 vom: 17. Juni, Seite 93-105 (DE-627)130929395 (DE-600)1056014-2 (DE-576)026322242 0923-9820 nnns volume:23 year:2011 number:1 day:17 month:06 pages:93-105 https://doi.org/10.1007/s10532-011-9489-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_2016 GBV_ILN_4082 GBV_ILN_4219 AR 23 2011 1 17 06 93-105 |
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10.1007/s10532-011-9489-6 doi (DE-627)OLC2050403070 (DE-He213)s10532-011-9489-6-p DE-627 ger DE-627 rakwb eng 570 610 VZ 12 ssgn Wakabayashi, Masayuki verfasserin aut Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles 2011 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2011 Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. Seaweed Degradation Alginate lyase Cellulase Sakatoku, Akihiro aut Noda, Fumio aut Noda, Minoru aut Tanaka, Daisuke aut Nakamura, Shogo aut Enthalten in Biodegradation Springer Netherlands, 1990 23(2011), 1 vom: 17. Juni, Seite 93-105 (DE-627)130929395 (DE-600)1056014-2 (DE-576)026322242 0923-9820 nnns volume:23 year:2011 number:1 day:17 month:06 pages:93-105 https://doi.org/10.1007/s10532-011-9489-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_2016 GBV_ILN_4082 GBV_ILN_4219 AR 23 2011 1 17 06 93-105 |
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10.1007/s10532-011-9489-6 doi (DE-627)OLC2050403070 (DE-He213)s10532-011-9489-6-p DE-627 ger DE-627 rakwb eng 570 610 VZ 12 ssgn Wakabayashi, Masayuki verfasserin aut Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles 2011 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2011 Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. Seaweed Degradation Alginate lyase Cellulase Sakatoku, Akihiro aut Noda, Fumio aut Noda, Minoru aut Tanaka, Daisuke aut Nakamura, Shogo aut Enthalten in Biodegradation Springer Netherlands, 1990 23(2011), 1 vom: 17. Juni, Seite 93-105 (DE-627)130929395 (DE-600)1056014-2 (DE-576)026322242 0923-9820 nnns volume:23 year:2011 number:1 day:17 month:06 pages:93-105 https://doi.org/10.1007/s10532-011-9489-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_2016 GBV_ILN_4082 GBV_ILN_4219 AR 23 2011 1 17 06 93-105 |
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10.1007/s10532-011-9489-6 doi (DE-627)OLC2050403070 (DE-He213)s10532-011-9489-6-p DE-627 ger DE-627 rakwb eng 570 610 VZ 12 ssgn Wakabayashi, Masayuki verfasserin aut Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles 2011 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2011 Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. Seaweed Degradation Alginate lyase Cellulase Sakatoku, Akihiro aut Noda, Fumio aut Noda, Minoru aut Tanaka, Daisuke aut Nakamura, Shogo aut Enthalten in Biodegradation Springer Netherlands, 1990 23(2011), 1 vom: 17. Juni, Seite 93-105 (DE-627)130929395 (DE-600)1056014-2 (DE-576)026322242 0923-9820 nnns volume:23 year:2011 number:1 day:17 month:06 pages:93-105 https://doi.org/10.1007/s10532-011-9489-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_2016 GBV_ILN_4082 GBV_ILN_4219 AR 23 2011 1 17 06 93-105 |
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10.1007/s10532-011-9489-6 doi (DE-627)OLC2050403070 (DE-He213)s10532-011-9489-6-p DE-627 ger DE-627 rakwb eng 570 610 VZ 12 ssgn Wakabayashi, Masayuki verfasserin aut Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles 2011 Text txt rdacontent ohne Hilfsmittel zu benutzen n rdamedia Band nc rdacarrier © Springer Science+Business Media B.V. 2011 Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. Seaweed Degradation Alginate lyase Cellulase Sakatoku, Akihiro aut Noda, Fumio aut Noda, Minoru aut Tanaka, Daisuke aut Nakamura, Shogo aut Enthalten in Biodegradation Springer Netherlands, 1990 23(2011), 1 vom: 17. Juni, Seite 93-105 (DE-627)130929395 (DE-600)1056014-2 (DE-576)026322242 0923-9820 nnns volume:23 year:2011 number:1 day:17 month:06 pages:93-105 https://doi.org/10.1007/s10532-011-9489-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_OLC SSG-OLC-UMW SSG-OLC-TEC SSG-OLC-CHE GBV_ILN_70 GBV_ILN_2016 GBV_ILN_4082 GBV_ILN_4219 AR 23 2011 1 17 06 93-105 |
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Enthalten in Biodegradation 23(2011), 1 vom: 17. Juni, Seite 93-105 volume:23 year:2011 number:1 day:17 month:06 pages:93-105 |
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Wakabayashi, Masayuki @@aut@@ Sakatoku, Akihiro @@aut@@ Noda, Fumio @@aut@@ Noda, Minoru @@aut@@ Tanaka, Daisuke @@aut@@ Nakamura, Shogo @@aut@@ |
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isolation and characterization of microbulbifer species 6532a degrading seaweed thalli to single cell detritus particles |
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Isolation and characterization of Microbulbifer species 6532A degrading seaweed thalli to single cell detritus particles |
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Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. © Springer Science+Business Media B.V. 2011 |
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Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. © Springer Science+Business Media B.V. 2011 |
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Abstract To reduce the volume of seaweed wastes and extract polysaccharides, seaweed-degrading bacteria were isolated from drifting macroalgae harvested along the coast of Toyama Bay, Japan. Sixty-four bacterial isolates were capable of degrading “Wakame” (Undaria pinnatifida) thallus fragments into single cell detritus (SCD) particles. Amongst these, strain 6532A was the most active degrader of thallus fragments, and was capable of degrading thallus fragments to SCD particles within a day. Although the sequence similarity of the 16S rRNA gene of strain 6532A was 100% similar to that of Microbulbifer elongatus JAMB-A7, several distinct differences were observed between strains, including motility, morphology, and utilization of d-arabinose and gelatin. Consequently, strain 6532A was classified as a new Microbulbifer strain, and was designated Microbulbifer sp. 6532A. Strain 6532A was capable of degrading both alginate and cellulose in the culture medium, zymogram analysis of which revealed the presence of multiple alginate lyases and cellulases. To the best of our knowledge, this is the first study to directly demonstrate the existence of these enzymes in Microbulbifer species. Shotgun cloning and sequencing of the alginate lyase gene in 6532A revealed a 1,074-bp open reading frame, which was designated algMsp. The reading frame encoded a PL family seven enzyme composed of 358 amino acids (38,181 Da). With a similarity of 74.2%, the deduced amino acid sequence was most similar to a Saccharophagus enzyme (alg 7C). These findings suggest that algMsp in strain 6532A is a novel alginate lyase gene. © Springer Science+Business Media B.V. 2011 |
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