DPT tautomerization of the long A∙A* Watson-Crick base pair formed by the amino and imino tautomers of adenine: combined QM and QTAIM investigation

Abstract Combining quantum-mechanical (QM) calculations with quantum theory of atoms in molecules (QTAIM) and using the methodology of sweeps of the energetic, electron-topological, geometric and polar parameters, which describe the course of the tautomerization along the intrinsic reaction coordina...
Ausführliche Beschreibung

Abstract Combining quantum-mechanical (QM) calculations with quantum theory of atoms in molecules (QTAIM) and using the methodology of sweeps of the energetic, electron-topological, geometric and polar parameters, which describe the course of the tautomerization along the intrinsic reaction coordinate (IRC), we showed for the first time that the biologically important A∙A* base pair ($ C_{s} $ symmetry) formed by the amino and imino tautomers of adenine (A) tautomerizes via asynchronous concerted double proton transfer (DPT) through a transition state (TS), which is the $ A^{+} $∙$ A^{−} $ zwitterion with the separated charge, with $ C_{s} $ symmetry. The nine key points, which can be considered as electron-topological “fingerprints” of the asynchronous concerted A∙A*↔A*∙A tautomerization process via the DPT, were detected and completely investigated along the IRC of the A∙A*↔A*∙A tautomerization. Based on the sweeps of the H-bond energies, it was found that intermolecular antiparallel N6Н⋯N6 (7.01 kcal $ mol^{−1} $) and N1H⋯N1 (6.88 kcal $ mol^{−1} $) H-bonds are significantly cooperative and mutually reinforce each other. It was shown for the first time that the A∙A*↔A*∙A tautomerization is assisted by the third C2H⋯HC2 dihydrogen bond (DHB), which, in contrast to the two others N6H⋯N6 and N1H⋯N1 H-bonds, exists within the IRC range from −2.92 to 2.92 Å. The DHB cooperatively strengthens, reaching its maximum energy 0.42 kcal $ mol^{−1} $ at IRC = −0.52 Å and minimum energy 0.25 kcal $ mol^{−1} $ at IRC = −2.92 Å, and is accompanied by strengthening of the two other aforementioned classical H-bonds. We established that the C2H⋯HC2 DHB completely satisfies the electron-topological criteria for H-bonding, in particular Bader’s and all eight “two-molecule” Koch and Popelier’s criteria. The positive value of the Grunenberg’s compliance constant (5.203 Å/mdyn) at the $ TS_{A∙A*↔A*∙A} $ proves that the C2H⋯HC2 DHB is a stabilizing interaction. NBO analysis predicts transfer of charge from σ(C2–H) bonding orbital to σ*(H–C2) anti-bonding orbital; at this point, the stabilization energy $ E^{(2)} $ is equal to 0.19 kcal $ mol^{−1} $ at the $ TS_{A∙A*↔A*∙A} $. Ausführliche Beschreibung

Autor*in:	Brovarets’, Ol’ha O. [verfasserIn] Zhurakivsky, Roman O. [verfasserIn] Hovorun, Dmytro M. [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2013

Schlagwörter:	Amino and imino tautomers of adenine Sweeps of the energetic, electron-topological, geometric and polar parameters along the IRC The double proton transfer Cooperativity of the H-bonds CH∙∙∙HC dihydrogen bond B3LYP and MP2 levels of QM theory QTAIM analysis

Übergeordnetes Werk:	Enthalten in: Journal of molecular modeling - Berlin : Springer, 1995, 19(2013), 10 vom: 29. Mai, Seite 4223-4237
Übergeordnetes Werk:	volume:19 ; year:2013 ; number:10 ; day:29 ; month:05 ; pages:4223-4237

Links:	Volltext

DOI / URN:	10.1007/s00894-013-1880-2

Katalog-ID:	SPR007899025