Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development

Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were...
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Autor*in:	Li, Juanjuan [verfasserIn] Shi, Tao [verfasserIn] Huang, Longyu [verfasserIn] He, Dongli [verfasserIn] Nyong’A, Tonny Maraga [verfasserIn] Yang, Pingfang [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2018

Schlagwörter:	Lotus seed Cotyledon RNA-seq Transcriptome

Übergeordnetes Werk:	Enthalten in: Plant growth regulation - Dordrecht : Springer Science + Business Media B.V., 1982, 86(2018), 3 vom: 16. Aug., Seite 339-350
Übergeordnetes Werk:	volume:86 ; year:2018 ; number:3 ; day:16 ; month:08 ; pages:339-350

Links:	Volltext

DOI / URN:	10.1007/s10725-018-0433-1

Katalog-ID:	SPR012769754

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520			\|a Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits.
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matchkey_str	article:15735087:2018----::ytmtcrncitmcnlssrvdsnihsnoounlm
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publishDate	2018
allfields	10.1007/s10725-018-0433-1 doi (DE-627)SPR012769754 (SPR)s10725-018-0433-1-e DE-627 ger DE-627 rakwb eng 333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Li, Juanjuan verfasserin aut Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits. Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Shi, Tao verfasserin aut Huang, Longyu verfasserin aut He, Dongli verfasserin aut Nyong’A, Tonny Maraga verfasserin aut Yang, Pingfang verfasserin aut Enthalten in Plant growth regulation Dordrecht : Springer Science + Business Media B.V., 1982 86(2018), 3 vom: 16. Aug., Seite 339-350 (DE-627)270932941 (DE-600)1478400-2 1573-5087 nnns volume:86 year:2018 number:3 day:16 month:08 pages:339-350 https://dx.doi.org/10.1007/s10725-018-0433-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 ASE 42.41 ASE 48.52 ASE AR 86 2018 3 16 08 339-350
spelling	10.1007/s10725-018-0433-1 doi (DE-627)SPR012769754 (SPR)s10725-018-0433-1-e DE-627 ger DE-627 rakwb eng 333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Li, Juanjuan verfasserin aut Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits. Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Shi, Tao verfasserin aut Huang, Longyu verfasserin aut He, Dongli verfasserin aut Nyong’A, Tonny Maraga verfasserin aut Yang, Pingfang verfasserin aut Enthalten in Plant growth regulation Dordrecht : Springer Science + Business Media B.V., 1982 86(2018), 3 vom: 16. Aug., Seite 339-350 (DE-627)270932941 (DE-600)1478400-2 1573-5087 nnns volume:86 year:2018 number:3 day:16 month:08 pages:339-350 https://dx.doi.org/10.1007/s10725-018-0433-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 ASE 42.41 ASE 48.52 ASE AR 86 2018 3 16 08 339-350
allfields_unstemmed	10.1007/s10725-018-0433-1 doi (DE-627)SPR012769754 (SPR)s10725-018-0433-1-e DE-627 ger DE-627 rakwb eng 333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Li, Juanjuan verfasserin aut Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits. Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Shi, Tao verfasserin aut Huang, Longyu verfasserin aut He, Dongli verfasserin aut Nyong’A, Tonny Maraga verfasserin aut Yang, Pingfang verfasserin aut Enthalten in Plant growth regulation Dordrecht : Springer Science + Business Media B.V., 1982 86(2018), 3 vom: 16. Aug., Seite 339-350 (DE-627)270932941 (DE-600)1478400-2 1573-5087 nnns volume:86 year:2018 number:3 day:16 month:08 pages:339-350 https://dx.doi.org/10.1007/s10725-018-0433-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 ASE 42.41 ASE 48.52 ASE AR 86 2018 3 16 08 339-350
allfieldsGer	10.1007/s10725-018-0433-1 doi (DE-627)SPR012769754 (SPR)s10725-018-0433-1-e DE-627 ger DE-627 rakwb eng 333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Li, Juanjuan verfasserin aut Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits. Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Shi, Tao verfasserin aut Huang, Longyu verfasserin aut He, Dongli verfasserin aut Nyong’A, Tonny Maraga verfasserin aut Yang, Pingfang verfasserin aut Enthalten in Plant growth regulation Dordrecht : Springer Science + Business Media B.V., 1982 86(2018), 3 vom: 16. Aug., Seite 339-350 (DE-627)270932941 (DE-600)1478400-2 1573-5087 nnns volume:86 year:2018 number:3 day:16 month:08 pages:339-350 https://dx.doi.org/10.1007/s10725-018-0433-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 ASE 42.41 ASE 48.52 ASE AR 86 2018 3 16 08 339-350
allfieldsSound	10.1007/s10725-018-0433-1 doi (DE-627)SPR012769754 (SPR)s10725-018-0433-1-e DE-627 ger DE-627 rakwb eng 333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Li, Juanjuan verfasserin aut Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits. Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Shi, Tao verfasserin aut Huang, Longyu verfasserin aut He, Dongli verfasserin aut Nyong’A, Tonny Maraga verfasserin aut Yang, Pingfang verfasserin aut Enthalten in Plant growth regulation Dordrecht : Springer Science + Business Media B.V., 1982 86(2018), 3 vom: 16. Aug., Seite 339-350 (DE-627)270932941 (DE-600)1478400-2 1573-5087 nnns volume:86 year:2018 number:3 day:16 month:08 pages:339-350 https://dx.doi.org/10.1007/s10725-018-0433-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 48.50 ASE 42.41 ASE 48.52 ASE AR 86 2018 3 16 08 339-350
language	English
source	Enthalten in Plant growth regulation 86(2018), 3 vom: 16. Aug., Seite 339-350 volume:86 year:2018 number:3 day:16 month:08 pages:339-350
sourceStr	Enthalten in Plant growth regulation 86(2018), 3 vom: 16. Aug., Seite 339-350 volume:86 year:2018 number:3 day:16 month:08 pages:339-350
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Lotus seed Cotyledon RNA-seq Transcriptome
dewey-raw	333.7
isfreeaccess_bool	false
container_title	Plant growth regulation
authorswithroles_txt_mv	Li, Juanjuan @@aut@@ Shi, Tao @@aut@@ Huang, Longyu @@aut@@ He, Dongli @@aut@@ Nyong’A, Tonny Maraga @@aut@@ Yang, Pingfang @@aut@@
publishDateDaySort_date	2018-08-16T00:00:00Z
hierarchy_top_id	270932941
dewey-sort	3333.7
id	SPR012769754
language_de	englisch
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author	Li, Juanjuan
spellingShingle	Li, Juanjuan ddc 333.7 bkl 48.50 bkl 42.41 bkl 48.52 misc Lotus seed misc Cotyledon misc RNA-seq misc Transcriptome Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
authorStr	Li, Juanjuan
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topic_title	333.7 580 ASE 48.50 bkl 42.41 bkl 48.52 bkl Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development Lotus seed (dpeaa)DE-He213 Cotyledon (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213
topic	ddc 333.7 bkl 48.50 bkl 42.41 bkl 48.52 misc Lotus seed misc Cotyledon misc RNA-seq misc Transcriptome
topic_unstemmed	ddc 333.7 bkl 48.50 bkl 42.41 bkl 48.52 misc Lotus seed misc Cotyledon misc RNA-seq misc Transcriptome
topic_browse	ddc 333.7 bkl 48.50 bkl 42.41 bkl 48.52 misc Lotus seed misc Cotyledon misc RNA-seq misc Transcriptome
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hierarchy_parent_title	Plant growth regulation
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title	Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
ctrlnum	(DE-627)SPR012769754 (SPR)s10725-018-0433-1-e
title_full	Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
author_sort	Li, Juanjuan
journal	Plant growth regulation
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lang_code	eng
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author_browse	Li, Juanjuan Shi, Tao Huang, Longyu He, Dongli Nyong’A, Tonny Maraga Yang, Pingfang
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author-letter	Li, Juanjuan
doi_str_mv	10.1007/s10725-018-0433-1
dewey-full	333.7 580
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title_sort	systematic transcriptomic analysis provides insights into lotus (nelumbo nucifera) seed development
title_auth	Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
abstract	Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits.
abstractGer	Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits.
abstract_unstemmed	Abstract Seed size is one of the most important determinants of yield in lotus (Nelumbo nucifera). The cotyledon, which is responsible for nutrient storage in the mature seed, is the major factor affecting seed size in this economically important crop. Here, transcriptome analysis on cotyledons were performed during the rapid expansion stage of two lotus cultivars with different seed size and yield, China Antique and Jianxuan-17, at 9, 12, and 15 days after pollination (DAP). We identified 22,549 genes, including 2414 novel genes. Among them, 8437 genes were differentially expressed between CA and JX from 9 to 15 DAP. Gene ontology analysis suggested that these DEGs were significantly enriched in cell proliferation and gene expression. Dozens of DEGs are involved in brassinosteroids (BRs) biosynthesis and signaling pathway. Nine genes controlling seed size by cell number and size were candidate genes regulating lotus seed size. There was a notable difference in the expression patterns and level of starch-synthesis genes between two cultivars. NNU_20629 and NNU_05331 were likely responsible for the difference in starch accumulation between CA and JX, which might lead to their different yield. Pairwise comparisons of our transcriptome data provide insights into lotus seed development, which could facilitate projects aimed at breeding lotus with improved traits.
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container_issue	3
title_short	Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development
url	https://dx.doi.org/10.1007/s10725-018-0433-1
remote_bool	true
author2	Shi, Tao Huang, Longyu He, Dongli Nyong’A, Tonny Maraga Yang, Pingfang
author2Str	Shi, Tao Huang, Longyu He, Dongli Nyong’A, Tonny Maraga Yang, Pingfang
ppnlink	270932941
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doi_str	10.1007/s10725-018-0433-1
up_date	2024-07-03T15:13:07.033Z
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score	7.4005013

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Systematic transcriptomic analysis provides insights into lotus (Nelumbo nucifera) seed development

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