Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica
Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperatur...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Liu, Fuli [verfasserIn] Zhang, Pengyan [verfasserIn] Liang, Zhourui [verfasserIn] Wang, Wenjun [verfasserIn] Sun, Xiutao [verfasserIn] Wang, Feijiu [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2019 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Journal of applied phycology - Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989, 31(2019), 5 vom: 08. Mai, Seite 3077-3089 |
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| Übergeordnetes Werk: |
volume:31 ; year:2019 ; number:5 ; day:08 ; month:05 ; pages:3077-3089 |
| Links: |
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| DOI / URN: |
10.1007/s10811-019-01813-w |
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| Katalog-ID: |
SPR01348995X |
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| 520 | |a Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. | ||
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| 650 | 4 | |a iTRAQ |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Proteomics |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a RNA-seq |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Phaeophyceae |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Transcriptomics |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Zhang, Pengyan |e verfasserin |4 aut | |
| 700 | 1 | |a Liang, Zhourui |e verfasserin |4 aut | |
| 700 | 1 | |a Wang, Wenjun |e verfasserin |4 aut | |
| 700 | 1 | |a Sun, Xiutao |e verfasserin |4 aut | |
| 700 | 1 | |a Wang, Feijiu |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Journal of applied phycology |d Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 |g 31(2019), 5 vom: 08. Mai, Seite 3077-3089 |w (DE-627)270429980 |w (DE-600)1477703-4 |x 1573-5176 |7 nnns |
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10.1007/s10811-019-01813-w doi (DE-627)SPR01348995X (SPR)s10811-019-01813-w-e DE-627 ger DE-627 rakwb eng 580 570 ASE 42.00 bkl Liu, Fuli verfasserin aut Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 Zhang, Pengyan verfasserin aut Liang, Zhourui verfasserin aut Wang, Wenjun verfasserin aut Sun, Xiutao verfasserin aut Wang, Feijiu verfasserin aut Enthalten in Journal of applied phycology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 31(2019), 5 vom: 08. Mai, Seite 3077-3089 (DE-627)270429980 (DE-600)1477703-4 1573-5176 nnns volume:31 year:2019 number:5 day:08 month:05 pages:3077-3089 https://dx.doi.org/10.1007/s10811-019-01813-w lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_381 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 ASE AR 31 2019 5 08 05 3077-3089 |
| spelling |
10.1007/s10811-019-01813-w doi (DE-627)SPR01348995X (SPR)s10811-019-01813-w-e DE-627 ger DE-627 rakwb eng 580 570 ASE 42.00 bkl Liu, Fuli verfasserin aut Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 Zhang, Pengyan verfasserin aut Liang, Zhourui verfasserin aut Wang, Wenjun verfasserin aut Sun, Xiutao verfasserin aut Wang, Feijiu verfasserin aut Enthalten in Journal of applied phycology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 31(2019), 5 vom: 08. Mai, Seite 3077-3089 (DE-627)270429980 (DE-600)1477703-4 1573-5176 nnns volume:31 year:2019 number:5 day:08 month:05 pages:3077-3089 https://dx.doi.org/10.1007/s10811-019-01813-w lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_381 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 ASE AR 31 2019 5 08 05 3077-3089 |
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10.1007/s10811-019-01813-w doi (DE-627)SPR01348995X (SPR)s10811-019-01813-w-e DE-627 ger DE-627 rakwb eng 580 570 ASE 42.00 bkl Liu, Fuli verfasserin aut Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 Zhang, Pengyan verfasserin aut Liang, Zhourui verfasserin aut Wang, Wenjun verfasserin aut Sun, Xiutao verfasserin aut Wang, Feijiu verfasserin aut Enthalten in Journal of applied phycology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 31(2019), 5 vom: 08. Mai, Seite 3077-3089 (DE-627)270429980 (DE-600)1477703-4 1573-5176 nnns volume:31 year:2019 number:5 day:08 month:05 pages:3077-3089 https://dx.doi.org/10.1007/s10811-019-01813-w lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_381 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 ASE AR 31 2019 5 08 05 3077-3089 |
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10.1007/s10811-019-01813-w doi (DE-627)SPR01348995X (SPR)s10811-019-01813-w-e DE-627 ger DE-627 rakwb eng 580 570 ASE 42.00 bkl Liu, Fuli verfasserin aut Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 Zhang, Pengyan verfasserin aut Liang, Zhourui verfasserin aut Wang, Wenjun verfasserin aut Sun, Xiutao verfasserin aut Wang, Feijiu verfasserin aut Enthalten in Journal of applied phycology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 31(2019), 5 vom: 08. Mai, Seite 3077-3089 (DE-627)270429980 (DE-600)1477703-4 1573-5176 nnns volume:31 year:2019 number:5 day:08 month:05 pages:3077-3089 https://dx.doi.org/10.1007/s10811-019-01813-w lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_381 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 ASE AR 31 2019 5 08 05 3077-3089 |
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10.1007/s10811-019-01813-w doi (DE-627)SPR01348995X (SPR)s10811-019-01813-w-e DE-627 ger DE-627 rakwb eng 580 570 ASE 42.00 bkl Liu, Fuli verfasserin aut Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 Zhang, Pengyan verfasserin aut Liang, Zhourui verfasserin aut Wang, Wenjun verfasserin aut Sun, Xiutao verfasserin aut Wang, Feijiu verfasserin aut Enthalten in Journal of applied phycology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1989 31(2019), 5 vom: 08. Mai, Seite 3077-3089 (DE-627)270429980 (DE-600)1477703-4 1573-5176 nnns volume:31 year:2019 number:5 day:08 month:05 pages:3077-3089 https://dx.doi.org/10.1007/s10811-019-01813-w lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_381 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.00 ASE AR 31 2019 5 08 05 3077-3089 |
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Heat stress iTRAQ Proteomics RNA-seq Phaeophyceae Transcriptomics |
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Journal of applied phycology |
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Liu, Fuli @@aut@@ Zhang, Pengyan @@aut@@ Liang, Zhourui @@aut@@ Wang, Wenjun @@aut@@ Sun, Xiutao @@aut@@ Wang, Feijiu @@aut@@ |
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Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. 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Liu, Fuli |
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Liu, Fuli ddc 580 bkl 42.00 misc Heat stress misc iTRAQ misc Proteomics misc RNA-seq misc Phaeophyceae misc Transcriptomics Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica |
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580 570 ASE 42.00 bkl Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica Heat stress (dpeaa)DE-He213 iTRAQ (dpeaa)DE-He213 Proteomics (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Phaeophyceae (dpeaa)DE-He213 Transcriptomics (dpeaa)DE-He213 |
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dynamic profile of proteome revealed multiple levels of regulation under heat stress in saccharina japonica |
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Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica |
| abstract |
Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. |
| abstractGer |
Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. |
| abstract_unstemmed |
Abstract Saccharina japonica is a typical seaweed that has been domesticated and cultivated at a large scale for a long time worldwide. Compared to the wild populations, the Saccharina cultivars have significant greater high-temperature tolerance. However, the molecular mechanisms of high temperature tolerance are still unknown. This study characterized the protein expression profile under heat stress using the iTRAQ strategy integrated with transcriptome data to identify the candidate genes involved in the heat stress tolerance. A total of 104 and 107 proteins were identified as the differential expressed proteins (DEPs) in sporophyte and gametophyte, respectively. Only 14 DEPs identified both in sporophyte and gametophyte indicated that the two generations have different protein expression in response to the heat stress. The correlation between proteome and transcriptome profile under heat stress was very low, with only six genes were identified both on the transcription and protein levels. However, 23 pathways, including multiple cellular processes such as nitrogen and carbon metabolism, transcription, translation, posttranslational modification, antioxidant system etc., were identified. This study is the first exploration into the molecular mechanism of Saccharina heat tolerance on both transcriptomic and proteomic levels, which provides new insight into the regulation mechanism in response to heat stress in kelp. |
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| title_short |
Dynamic profile of proteome revealed multiple levels of regulation under heat stress in Saccharina japonica |
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https://dx.doi.org/10.1007/s10811-019-01813-w |
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Zhang, Pengyan Liang, Zhourui Wang, Wenjun Sun, Xiutao Wang, Feijiu |
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Zhang, Pengyan Liang, Zhourui Wang, Wenjun Sun, Xiutao Wang, Feijiu |
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| doi_str |
10.1007/s10811-019-01813-w |
| up_date |
2024-07-03T20:05:17.850Z |
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| score |
7.4005775 |