Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes
Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tr...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Wang, Hua [verfasserIn] Wang, Ziyu [verfasserIn] Zhang, Ming [verfasserIn] Jia, Bing [verfasserIn] Heng, Wei [verfasserIn] Ye, Zhenfeng [verfasserIn] Zhu, Liwu [verfasserIn] Xu, Xiaoniu [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2018 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Tree genetics & genomes - Berlin : Springer, 2005, 14(2018), 3 vom: 23. Mai |
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| Übergeordnetes Werk: |
volume:14 ; year:2018 ; number:3 ; day:23 ; month:05 |
| Links: |
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| DOI / URN: |
10.1007/s11295-018-1249-x |
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| Katalog-ID: |
SPR018675697 |
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| 245 | 1 | 0 | |a Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
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| 520 | |a Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. | ||
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| 650 | 4 | |a Drought-responsive genes |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Transcriptome analysis |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a RNA sequence |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Wang, Ziyu |e verfasserin |4 aut | |
| 700 | 1 | |a Zhang, Ming |e verfasserin |4 aut | |
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| 700 | 1 | |a Heng, Wei |e verfasserin |4 aut | |
| 700 | 1 | |a Ye, Zhenfeng |e verfasserin |4 aut | |
| 700 | 1 | |a Zhu, Liwu |e verfasserin |4 aut | |
| 700 | 1 | |a Xu, Xiaoniu |e verfasserin |4 aut | |
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10.1007/s11295-018-1249-x doi (DE-627)SPR018675697 (SPR)s11295-018-1249-x-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Wang, Hua verfasserin aut Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 Wang, Ziyu verfasserin aut Zhang, Ming verfasserin aut Jia, Bing verfasserin aut Heng, Wei verfasserin aut Ye, Zhenfeng verfasserin aut Zhu, Liwu verfasserin aut Xu, Xiaoniu verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 14(2018), 3 vom: 23. Mai (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:14 year:2018 number:3 day:23 month:05 https://dx.doi.org/10.1007/s11295-018-1249-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 14 2018 3 23 05 |
| spelling |
10.1007/s11295-018-1249-x doi (DE-627)SPR018675697 (SPR)s11295-018-1249-x-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Wang, Hua verfasserin aut Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 Wang, Ziyu verfasserin aut Zhang, Ming verfasserin aut Jia, Bing verfasserin aut Heng, Wei verfasserin aut Ye, Zhenfeng verfasserin aut Zhu, Liwu verfasserin aut Xu, Xiaoniu verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 14(2018), 3 vom: 23. Mai (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:14 year:2018 number:3 day:23 month:05 https://dx.doi.org/10.1007/s11295-018-1249-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 14 2018 3 23 05 |
| allfields_unstemmed |
10.1007/s11295-018-1249-x doi (DE-627)SPR018675697 (SPR)s11295-018-1249-x-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Wang, Hua verfasserin aut Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 Wang, Ziyu verfasserin aut Zhang, Ming verfasserin aut Jia, Bing verfasserin aut Heng, Wei verfasserin aut Ye, Zhenfeng verfasserin aut Zhu, Liwu verfasserin aut Xu, Xiaoniu verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 14(2018), 3 vom: 23. Mai (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:14 year:2018 number:3 day:23 month:05 https://dx.doi.org/10.1007/s11295-018-1249-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 14 2018 3 23 05 |
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10.1007/s11295-018-1249-x doi (DE-627)SPR018675697 (SPR)s11295-018-1249-x-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Wang, Hua verfasserin aut Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 Wang, Ziyu verfasserin aut Zhang, Ming verfasserin aut Jia, Bing verfasserin aut Heng, Wei verfasserin aut Ye, Zhenfeng verfasserin aut Zhu, Liwu verfasserin aut Xu, Xiaoniu verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 14(2018), 3 vom: 23. Mai (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:14 year:2018 number:3 day:23 month:05 https://dx.doi.org/10.1007/s11295-018-1249-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 14 2018 3 23 05 |
| allfieldsSound |
10.1007/s11295-018-1249-x doi (DE-627)SPR018675697 (SPR)s11295-018-1249-x-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Wang, Hua verfasserin aut Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 Wang, Ziyu verfasserin aut Zhang, Ming verfasserin aut Jia, Bing verfasserin aut Heng, Wei verfasserin aut Ye, Zhenfeng verfasserin aut Zhu, Liwu verfasserin aut Xu, Xiaoniu verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 14(2018), 3 vom: 23. Mai (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:14 year:2018 number:3 day:23 month:05 https://dx.doi.org/10.1007/s11295-018-1249-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 14 2018 3 23 05 |
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English |
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Enthalten in Tree genetics & genomes 14(2018), 3 vom: 23. Mai volume:14 year:2018 number:3 day:23 month:05 |
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Enthalten in Tree genetics & genomes 14(2018), 3 vom: 23. Mai volume:14 year:2018 number:3 day:23 month:05 |
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Pear Drought-responsive genes Transcriptome analysis RNA sequence |
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Wang, Hua @@aut@@ Wang, Ziyu @@aut@@ Zhang, Ming @@aut@@ Jia, Bing @@aut@@ Heng, Wei @@aut@@ Ye, Zhenfeng @@aut@@ Zhu, Liwu @@aut@@ Xu, Xiaoniu @@aut@@ |
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In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. 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| author |
Wang, Hua |
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Wang, Hua ddc 580 bkl 42.43 misc Pear misc Drought-responsive genes misc Transcriptome analysis misc RNA sequence Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
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580 ASE 42.43 bkl Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes Pear (dpeaa)DE-He213 Drought-responsive genes (dpeaa)DE-He213 Transcriptome analysis (dpeaa)DE-He213 RNA sequence (dpeaa)DE-He213 |
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ddc 580 bkl 42.43 misc Pear misc Drought-responsive genes misc Transcriptome analysis misc RNA sequence |
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ddc 580 bkl 42.43 misc Pear misc Drought-responsive genes misc Transcriptome analysis misc RNA sequence |
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Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
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Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
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Tree genetics & genomes |
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Wang, Hua Wang, Ziyu Zhang, Ming Jia, Bing Heng, Wei Ye, Zhenfeng Zhu, Liwu Xu, Xiaoniu |
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transcriptome sequencing analysis of two different genotypes of asian pear reveals potential drought stress genes |
| title_auth |
Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
| abstract |
Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. |
| abstractGer |
Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. |
| abstract_unstemmed |
Abstract ‘Huangguan’ (HG) and ‘Whangkeumbae’ (HK) pears are two important Asian pear cultivars in China and South Korea, respectively. In practical production, ‘Huangguan’ pear is a drought-tolerant genotype while ‘Whangkeumbae’ pear is drought-sensitive. To uncover the mechanisms underlying pear tree tolerance to drought stress, a comprehensive transcriptome analysis was performed in this study. The results revealed a total of 1185 and 1667 differently expressed genes (DEGs) between control and treated plants of HG and HK pear, respectively. KEGG pathways enrichment analysis revealed that the DEGs were involved in the metabolism and signal transduction of various phytohormones. In HG, the DEGs annotated as ABA, gibberellic acid (GA), and salicylic acid (SA) were all upregulated, while those DEGs annotated as jasmonic acid (JA) were upregulated or downregulated. In HK, the DEGs annotated as ABA and JA were both upregulated or downregulated, but there were no DEGs annotated as GA and SA. In addition, there were 743 DEGs expressed in HG, but not in HK. Among them, there were 288 DEGs whose absolute values of $ log_{2} $(fold-change ratio) were greater than 2. Eight of the 288 DEGs were selected randomly for validating the reproducibility and accuracy of the transcriptome RNA-Seq data by using quantitative-PCR. Our results will be helpful for breeding drought-tolerant pear cultivars. |
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3 |
| title_short |
Transcriptome sequencing analysis of two different genotypes of Asian pear reveals potential drought stress genes |
| url |
https://dx.doi.org/10.1007/s11295-018-1249-x |
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| author2 |
Wang, Ziyu Zhang, Ming Jia, Bing Heng, Wei Ye, Zhenfeng Zhu, Liwu Xu, Xiaoniu |
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Wang, Ziyu Zhang, Ming Jia, Bing Heng, Wei Ye, Zhenfeng Zhu, Liwu Xu, Xiaoniu |
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| doi_str |
10.1007/s11295-018-1249-x |
| up_date |
2024-07-03T21:24:23.949Z |
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| score |
7.4010954 |