Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh

Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distri...
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Autor*in:	Huda, Md. Nurul [verfasserIn] Hasan, Mehfuz [verfasserIn] Abdullah, Hasan M. [verfasserIn] Sarker, Umakanta [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2018

Schlagwörter:	Common allele Molecular marker Genotyping Allelic diversity Fixation indices

Übergeordnetes Werk:	Enthalten in: Tree genetics & genomes - Berlin : Springer, 2005, 15(2018), 1 vom: 14. Dez.
Übergeordnetes Werk:	volume:15 ; year:2018 ; number:1 ; day:14 ; month:12

Links:	Volltext

DOI / URN:	10.1007/s11295-018-1310-9

Katalog-ID:	SPR018676316

Internformat


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100	1		\|a Huda, Md. Nurul \|e verfasserin \|4 aut
245	1	0	\|a Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
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520			\|a Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources.
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700	1		\|a Abdullah, Hasan M. \|e verfasserin \|4 aut
700	1		\|a Sarker, Umakanta \|e verfasserin \|4 aut
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Indexfelder

author_variant	m n h mn mnh m h mh h m a hm hma u s us
matchkey_str	article:16142950:2018----::ptadsrbtoadeeidvriyfidaeamheisleti
hierarchy_sort_str	2018
bklnumber	42.43
publishDate	2018
allfields	10.1007/s11295-018-1310-9 doi (DE-627)SPR018676316 (SPR)s11295-018-1310-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Huda, Md. Nurul verfasserin aut Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources. Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213 Hasan, Mehfuz verfasserin aut Abdullah, Hasan M. verfasserin aut Sarker, Umakanta verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 15(2018), 1 vom: 14. Dez. (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:15 year:2018 number:1 day:14 month:12 https://dx.doi.org/10.1007/s11295-018-1310-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 15 2018 1 14 12
spelling	10.1007/s11295-018-1310-9 doi (DE-627)SPR018676316 (SPR)s11295-018-1310-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Huda, Md. Nurul verfasserin aut Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources. Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213 Hasan, Mehfuz verfasserin aut Abdullah, Hasan M. verfasserin aut Sarker, Umakanta verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 15(2018), 1 vom: 14. Dez. (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:15 year:2018 number:1 day:14 month:12 https://dx.doi.org/10.1007/s11295-018-1310-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 15 2018 1 14 12
allfields_unstemmed	10.1007/s11295-018-1310-9 doi (DE-627)SPR018676316 (SPR)s11295-018-1310-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Huda, Md. Nurul verfasserin aut Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources. Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213 Hasan, Mehfuz verfasserin aut Abdullah, Hasan M. verfasserin aut Sarker, Umakanta verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 15(2018), 1 vom: 14. Dez. (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:15 year:2018 number:1 day:14 month:12 https://dx.doi.org/10.1007/s11295-018-1310-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 15 2018 1 14 12
allfieldsGer	10.1007/s11295-018-1310-9 doi (DE-627)SPR018676316 (SPR)s11295-018-1310-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Huda, Md. Nurul verfasserin aut Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources. Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213 Hasan, Mehfuz verfasserin aut Abdullah, Hasan M. verfasserin aut Sarker, Umakanta verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 15(2018), 1 vom: 14. Dez. (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:15 year:2018 number:1 day:14 month:12 https://dx.doi.org/10.1007/s11295-018-1310-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 15 2018 1 14 12
allfieldsSound	10.1007/s11295-018-1310-9 doi (DE-627)SPR018676316 (SPR)s11295-018-1310-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.43 bkl Huda, Md. Nurul verfasserin aut Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources. Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213 Hasan, Mehfuz verfasserin aut Abdullah, Hasan M. verfasserin aut Sarker, Umakanta verfasserin aut Enthalten in Tree genetics & genomes Berlin : Springer, 2005 15(2018), 1 vom: 14. Dez. (DE-627)481907769 (DE-600)2180926-4 1614-2950 nnns volume:15 year:2018 number:1 day:14 month:12 https://dx.doi.org/10.1007/s11295-018-1310-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4277 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.43 ASE AR 15 2018 1 14 12
language	English
source	Enthalten in Tree genetics & genomes 15(2018), 1 vom: 14. Dez. volume:15 year:2018 number:1 day:14 month:12
sourceStr	Enthalten in Tree genetics & genomes 15(2018), 1 vom: 14. Dez. volume:15 year:2018 number:1 day:14 month:12
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Common allele Molecular marker Genotyping Allelic diversity Fixation indices
dewey-raw	580
isfreeaccess_bool	false
container_title	Tree genetics & genomes
authorswithroles_txt_mv	Huda, Md. Nurul @@aut@@ Hasan, Mehfuz @@aut@@ Abdullah, Hasan M. @@aut@@ Sarker, Umakanta @@aut@@
publishDateDaySort_date	2018-12-14T00:00:00Z
hierarchy_top_id	481907769
dewey-sort	3580
id	SPR018676316
language_de	englisch
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author	Huda, Md. Nurul
spellingShingle	Huda, Md. Nurul ddc 580 bkl 42.43 misc Common allele misc Molecular marker misc Genotyping misc Allelic diversity misc Fixation indices Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
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topic_title	580 ASE 42.43 bkl Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh Common allele (dpeaa)DE-He213 Molecular marker (dpeaa)DE-He213 Genotyping (dpeaa)DE-He213 Allelic diversity (dpeaa)DE-He213 Fixation indices (dpeaa)DE-He213
topic	ddc 580 bkl 42.43 misc Common allele misc Molecular marker misc Genotyping misc Allelic diversity misc Fixation indices
topic_unstemmed	ddc 580 bkl 42.43 misc Common allele misc Molecular marker misc Genotyping misc Allelic diversity misc Fixation indices
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title	Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
ctrlnum	(DE-627)SPR018676316 (SPR)s11295-018-1310-9-e
title_full	Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
author_sort	Huda, Md. Nurul
journal	Tree genetics & genomes
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author_browse	Huda, Md. Nurul Hasan, Mehfuz Abdullah, Hasan M. Sarker, Umakanta
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author-letter	Huda, Md. Nurul
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title_sort	spatial distribution and genetic diversity of wild date palm (phoenix sylvestris) growing in coastal bangladesh
title_auth	Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
abstract	Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources.
abstractGer	Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources.
abstract_unstemmed	Abstract The aim of this study was to explore the prospects of integrating simple sequence repeat (SSR) or microsatellite marker data into a geographical information system to anticipate spatial distribution of allelic diversity of wild date palms in Bangladesh. The genetic diversity, spatial distribution, and population structure were assessed in 38 genotypes of wild date palms using 12 SSR primer pairs. A total of 67 alleles were counted ranging from 4 (KSU-PDL74) to 8 (MPdCIR070). Major allele frequency was in the range of 0.26 (MPdCIR032) to 0.89 (KSU-PDL74), polymorphic information content ranged from 0.18 (KSU-PDL74) to 0.75 (MPdCIR032), and gene diversity ranged from 0.19 (KSU-PDL74) to 0.77 (MPdCIR032). Three major clusters were formed by the unrooted tree grouping. The population structure divided 38 genotypes into six populations. Population 1 and Population 2 each contained seven pure genotypes while Populations 3, 4, 5, and 6 contained 6, 4, 3, and 3 pure genotypes, respectively. The remaining eight genotypes were admixtures. The pairwise Fst estimate among sub-groups indicated that the six populations are undoubtedly different from each other. The date palm genotypes of Amtoli, Doshmina, and Kuakata in coastal Bangladesh contained the highest allelic diversity (13–15). SSR2-80 and SSR5-80 were considered to be the most important alleles for the identification of areas with unique diversity as these alleles are repetitively found in a small geographic area. Locally common alleles of Bangladeshi wild date palm were identified. Outcomes of this research will offer valuable guidelines for future breeding strategies and will be beneficial for assessment and conservation of Bangladeshi wild date palm genetic resources.
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title_short	Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh
url	https://dx.doi.org/10.1007/s11295-018-1310-9
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author2	Hasan, Mehfuz Abdullah, Hasan M. Sarker, Umakanta
author2Str	Hasan, Mehfuz Abdullah, Hasan M. Sarker, Umakanta
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doi_str	10.1007/s11295-018-1310-9
up_date	2024-07-03T21:24:40.218Z
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Spatial distribution and genetic diversity of wild date palm (Phoenix sylvestris) growing in coastal Bangladesh

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Vorhandene Bände

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