Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs
Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/or...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Wang, Jiaqing [verfasserIn] Hou, Lin [verfasserIn] |
|---|
| Format: |
E-Artikel |
|---|---|
| Sprache: |
Englisch |
| Erschienen: |
2010 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Frontiers of agriculture in China - [S.l.] : Higher Education Press, 2007, 4(2010), 1 vom: 09. Feb., Seite 121-127 |
|---|---|
| Übergeordnetes Werk: |
volume:4 ; year:2010 ; number:1 ; day:09 ; month:02 ; pages:121-127 |
| Links: |
|---|
| DOI / URN: |
10.1007/s11703-010-0101-3 |
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SPR021931380 |
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| 520 | |a Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. | ||
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10.1007/s11703-010-0101-3 doi (DE-627)SPR021931380 (SPR)s11703-010-0101-3-e DE-627 ger DE-627 rakwb eng 630 640 ASE Wang, Jiaqing verfasserin aut Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. Unigene (dpeaa)DE-He213 EST-SSRs (dpeaa)DE-He213 tissues/organs (dpeaa)DE-He213 Hou, Lin verfasserin aut Enthalten in Frontiers of agriculture in China [S.l.] : Higher Education Press, 2007 4(2010), 1 vom: 09. Feb., Seite 121-127 (DE-627)538633018 (DE-600)2379672-8 1673-744X nnns volume:4 year:2010 number:1 day:09 month:02 pages:121-127 https://dx.doi.org/10.1007/s11703-010-0101-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_22 GBV_ILN_40 GBV_ILN_70 GBV_ILN_100 GBV_ILN_702 GBV_ILN_2009 GBV_ILN_2018 GBV_ILN_2111 GBV_ILN_2129 GBV_ILN_2190 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4126 AR 4 2010 1 09 02 121-127 |
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10.1007/s11703-010-0101-3 doi (DE-627)SPR021931380 (SPR)s11703-010-0101-3-e DE-627 ger DE-627 rakwb eng 630 640 ASE Wang, Jiaqing verfasserin aut Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. Unigene (dpeaa)DE-He213 EST-SSRs (dpeaa)DE-He213 tissues/organs (dpeaa)DE-He213 Hou, Lin verfasserin aut Enthalten in Frontiers of agriculture in China [S.l.] : Higher Education Press, 2007 4(2010), 1 vom: 09. Feb., Seite 121-127 (DE-627)538633018 (DE-600)2379672-8 1673-744X nnns volume:4 year:2010 number:1 day:09 month:02 pages:121-127 https://dx.doi.org/10.1007/s11703-010-0101-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_22 GBV_ILN_40 GBV_ILN_70 GBV_ILN_100 GBV_ILN_702 GBV_ILN_2009 GBV_ILN_2018 GBV_ILN_2111 GBV_ILN_2129 GBV_ILN_2190 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4126 AR 4 2010 1 09 02 121-127 |
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10.1007/s11703-010-0101-3 doi (DE-627)SPR021931380 (SPR)s11703-010-0101-3-e DE-627 ger DE-627 rakwb eng 630 640 ASE Wang, Jiaqing verfasserin aut Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. Unigene (dpeaa)DE-He213 EST-SSRs (dpeaa)DE-He213 tissues/organs (dpeaa)DE-He213 Hou, Lin verfasserin aut Enthalten in Frontiers of agriculture in China [S.l.] : Higher Education Press, 2007 4(2010), 1 vom: 09. Feb., Seite 121-127 (DE-627)538633018 (DE-600)2379672-8 1673-744X nnns volume:4 year:2010 number:1 day:09 month:02 pages:121-127 https://dx.doi.org/10.1007/s11703-010-0101-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_22 GBV_ILN_40 GBV_ILN_70 GBV_ILN_100 GBV_ILN_702 GBV_ILN_2009 GBV_ILN_2018 GBV_ILN_2111 GBV_ILN_2129 GBV_ILN_2190 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4126 AR 4 2010 1 09 02 121-127 |
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10.1007/s11703-010-0101-3 doi (DE-627)SPR021931380 (SPR)s11703-010-0101-3-e DE-627 ger DE-627 rakwb eng 630 640 ASE Wang, Jiaqing verfasserin aut Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. Unigene (dpeaa)DE-He213 EST-SSRs (dpeaa)DE-He213 tissues/organs (dpeaa)DE-He213 Hou, Lin verfasserin aut Enthalten in Frontiers of agriculture in China [S.l.] : Higher Education Press, 2007 4(2010), 1 vom: 09. Feb., Seite 121-127 (DE-627)538633018 (DE-600)2379672-8 1673-744X nnns volume:4 year:2010 number:1 day:09 month:02 pages:121-127 https://dx.doi.org/10.1007/s11703-010-0101-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_22 GBV_ILN_40 GBV_ILN_70 GBV_ILN_100 GBV_ILN_702 GBV_ILN_2009 GBV_ILN_2018 GBV_ILN_2111 GBV_ILN_2129 GBV_ILN_2190 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4126 AR 4 2010 1 09 02 121-127 |
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10.1007/s11703-010-0101-3 doi (DE-627)SPR021931380 (SPR)s11703-010-0101-3-e DE-627 ger DE-627 rakwb eng 630 640 ASE Wang, Jiaqing verfasserin aut Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs 2010 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. Unigene (dpeaa)DE-He213 EST-SSRs (dpeaa)DE-He213 tissues/organs (dpeaa)DE-He213 Hou, Lin verfasserin aut Enthalten in Frontiers of agriculture in China [S.l.] : Higher Education Press, 2007 4(2010), 1 vom: 09. Feb., Seite 121-127 (DE-627)538633018 (DE-600)2379672-8 1673-744X nnns volume:4 year:2010 number:1 day:09 month:02 pages:121-127 https://dx.doi.org/10.1007/s11703-010-0101-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_22 GBV_ILN_40 GBV_ILN_70 GBV_ILN_100 GBV_ILN_702 GBV_ILN_2009 GBV_ILN_2018 GBV_ILN_2111 GBV_ILN_2129 GBV_ILN_2190 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4126 AR 4 2010 1 09 02 121-127 |
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Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs |
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Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs |
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Wang, Jiaqing |
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Frontiers of agriculture in China |
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10.1007/s11703-010-0101-3 |
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unigene derived ssr analysis for the fugu rubripes and insights into the characteristics of est-ssr distribution in tissues/organs |
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Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs |
| abstract |
Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. |
| abstractGer |
Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. |
| abstract_unstemmed |
Abstract A total of 11348 Unigene derived ESTs from five cDNA libraries corresponding to five different tissues/organs were screened for EST-SSR, and 1097 EST-SSRs (9.67%) were detected. There were considerable variations in the amount of EST-SSRs among the five tissues/organs. In all the tissues/organs, trinucleotide repeats (67.74%) were found to be most abundant. The trinucleotide repeats GCG were the most abundant in three tissues/organs that ranged from 80.2% in skin, 83.3% in gut, to 90.2% in fin. Dinucleotide was the second abundant repeat type (13.58%), followed by tetra-(12.38%), hexa-(5.34%), and penta-(0.96%) nucleotide repeats. Furthermore, the results of the present study also indicated that the EST-SSR motifs were not randomly distributed in tissues/organs of fugu, such as trinucleotide repeats were found to be strikingly abundant in fin, followed by skin and gut, tetra-nucleotide repeats were especially rich in muscle, while pentanucleotide repeats were less common in any tissue or organ. Most of the EST-SSRs in five tissues/organs that were assigned functions during the present study represent housekeeping genes. |
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Unigene derived SSR analysis for the Fugu rubripes and insights into the characteristics of EST-SSR distribution in tissues/organs |
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