Sequence and expression analysis of the Arabidopsis IQM family

Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) u...
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Gespeichert in:

Autor*in:	Zhou, Yuping [verfasserIn] Chen, Yuzhong [verfasserIn] Yamamoto, Kotaro T. [verfasserIn] Duan, Jun [verfasserIn] Tian, Cheng-en [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2009

Schlagwörter:	Calmodulin-binding protein Gene expression Heavy metal-induced protein IQM family Trichosanthin

Übergeordnetes Werk:	Enthalten in: Acta physiologiae plantarum - Berlin : Springer, 1997, 32(2009), 1 vom: 23. Sept., Seite 191-198
Übergeordnetes Werk:	volume:32 ; year:2009 ; number:1 ; day:23 ; month:09 ; pages:191-198

Links:	Volltext

DOI / URN:	10.1007/s11738-009-0398-9

Katalog-ID:	SPR02208374X

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520			\|a Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues.
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912			\|a GBV_ILN_32
912			\|a GBV_ILN_39
912			\|a GBV_ILN_40
912			\|a GBV_ILN_60
912			\|a GBV_ILN_62
912			\|a GBV_ILN_63
912			\|a GBV_ILN_65
912			\|a GBV_ILN_69
912			\|a GBV_ILN_70
912			\|a GBV_ILN_73
912			\|a GBV_ILN_74
912			\|a GBV_ILN_90
912			\|a GBV_ILN_95
912			\|a GBV_ILN_100
912			\|a GBV_ILN_105
912			\|a GBV_ILN_110
912			\|a GBV_ILN_120
912			\|a GBV_ILN_138
912			\|a GBV_ILN_150
912			\|a GBV_ILN_151
912			\|a GBV_ILN_152
912			\|a GBV_ILN_161
912			\|a GBV_ILN_170
912			\|a GBV_ILN_171
912			\|a GBV_ILN_187
912			\|a GBV_ILN_213
912			\|a GBV_ILN_224
912			\|a GBV_ILN_230
912			\|a GBV_ILN_250
912			\|a GBV_ILN_281
912			\|a GBV_ILN_285
912			\|a GBV_ILN_293
912			\|a GBV_ILN_370
912			\|a GBV_ILN_602
912			\|a GBV_ILN_636
912			\|a GBV_ILN_702
912			\|a GBV_ILN_2001
912			\|a GBV_ILN_2003
912			\|a GBV_ILN_2004
912			\|a GBV_ILN_2005
912			\|a GBV_ILN_2006
912			\|a GBV_ILN_2007
912			\|a GBV_ILN_2008
912			\|a GBV_ILN_2009
912			\|a GBV_ILN_2010
912			\|a GBV_ILN_2011
912			\|a GBV_ILN_2014
912			\|a GBV_ILN_2015
912			\|a GBV_ILN_2018
912			\|a GBV_ILN_2020
912			\|a GBV_ILN_2021
912			\|a GBV_ILN_2025
912			\|a GBV_ILN_2026
912			\|a GBV_ILN_2027
912			\|a GBV_ILN_2031
912			\|a GBV_ILN_2034
912			\|a GBV_ILN_2037
912			\|a GBV_ILN_2038
912			\|a GBV_ILN_2039
912			\|a GBV_ILN_2044
912			\|a GBV_ILN_2048
912			\|a GBV_ILN_2049
912			\|a GBV_ILN_2050
912			\|a GBV_ILN_2055
912			\|a GBV_ILN_2057
912			\|a GBV_ILN_2059
912			\|a GBV_ILN_2061
912			\|a GBV_ILN_2064
912			\|a GBV_ILN_2065
912			\|a GBV_ILN_2068
912			\|a GBV_ILN_2070
912			\|a GBV_ILN_2086
912			\|a GBV_ILN_2088
912			\|a GBV_ILN_2093
912			\|a GBV_ILN_2106
912			\|a GBV_ILN_2107
912			\|a GBV_ILN_2108
912			\|a GBV_ILN_2110
912			\|a GBV_ILN_2111
912			\|a GBV_ILN_2112
912			\|a GBV_ILN_2113
912			\|a GBV_ILN_2116
912			\|a GBV_ILN_2118
912			\|a GBV_ILN_2119
912			\|a GBV_ILN_2122
912			\|a GBV_ILN_2129
912			\|a GBV_ILN_2143
912			\|a GBV_ILN_2144
912			\|a GBV_ILN_2147
912			\|a GBV_ILN_2148
912			\|a GBV_ILN_2152
912			\|a GBV_ILN_2153
912			\|a GBV_ILN_2188
912			\|a GBV_ILN_2190
912			\|a GBV_ILN_2232
912			\|a GBV_ILN_2336
912			\|a GBV_ILN_2446
912			\|a GBV_ILN_2470
912			\|a GBV_ILN_2472
912			\|a GBV_ILN_2507
912			\|a GBV_ILN_2522
912			\|a GBV_ILN_2548
912			\|a GBV_ILN_4035
912			\|a GBV_ILN_4037
912			\|a GBV_ILN_4046
912			\|a GBV_ILN_4112
912			\|a GBV_ILN_4125
912			\|a GBV_ILN_4242
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912			\|a GBV_ILN_4251
912			\|a GBV_ILN_4305
912			\|a GBV_ILN_4306
912			\|a GBV_ILN_4307
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author_variant	y z yz y c yc k t y kt kty j d jd c e t cet
matchkey_str	article:18611664:2009----::eunenepesoaayioterb
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publishDate	2009
allfields	10.1007/s11738-009-0398-9 doi (DE-627)SPR02208374X (SPR)s11738-009-0398-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.41 bkl Zhou, Yuping verfasserin aut Sequence and expression analysis of the Arabidopsis IQM family 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues. Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213 Chen, Yuzhong verfasserin aut Yamamoto, Kotaro T. verfasserin aut Duan, Jun verfasserin aut Tian, Cheng-en verfasserin aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 32(2009), 1 vom: 23. Sept., Seite 191-198 (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:32 year:2009 number:1 day:23 month:09 pages:191-198 https://dx.doi.org/10.1007/s11738-009-0398-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.41 ASE AR 32 2009 1 23 09 191-198
spelling	10.1007/s11738-009-0398-9 doi (DE-627)SPR02208374X (SPR)s11738-009-0398-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.41 bkl Zhou, Yuping verfasserin aut Sequence and expression analysis of the Arabidopsis IQM family 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues. Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213 Chen, Yuzhong verfasserin aut Yamamoto, Kotaro T. verfasserin aut Duan, Jun verfasserin aut Tian, Cheng-en verfasserin aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 32(2009), 1 vom: 23. Sept., Seite 191-198 (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:32 year:2009 number:1 day:23 month:09 pages:191-198 https://dx.doi.org/10.1007/s11738-009-0398-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.41 ASE AR 32 2009 1 23 09 191-198
allfields_unstemmed	10.1007/s11738-009-0398-9 doi (DE-627)SPR02208374X (SPR)s11738-009-0398-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.41 bkl Zhou, Yuping verfasserin aut Sequence and expression analysis of the Arabidopsis IQM family 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues. Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213 Chen, Yuzhong verfasserin aut Yamamoto, Kotaro T. verfasserin aut Duan, Jun verfasserin aut Tian, Cheng-en verfasserin aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 32(2009), 1 vom: 23. Sept., Seite 191-198 (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:32 year:2009 number:1 day:23 month:09 pages:191-198 https://dx.doi.org/10.1007/s11738-009-0398-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.41 ASE AR 32 2009 1 23 09 191-198
allfieldsGer	10.1007/s11738-009-0398-9 doi (DE-627)SPR02208374X (SPR)s11738-009-0398-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.41 bkl Zhou, Yuping verfasserin aut Sequence and expression analysis of the Arabidopsis IQM family 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues. Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213 Chen, Yuzhong verfasserin aut Yamamoto, Kotaro T. verfasserin aut Duan, Jun verfasserin aut Tian, Cheng-en verfasserin aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 32(2009), 1 vom: 23. Sept., Seite 191-198 (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:32 year:2009 number:1 day:23 month:09 pages:191-198 https://dx.doi.org/10.1007/s11738-009-0398-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.41 ASE AR 32 2009 1 23 09 191-198
allfieldsSound	10.1007/s11738-009-0398-9 doi (DE-627)SPR02208374X (SPR)s11738-009-0398-9-e DE-627 ger DE-627 rakwb eng 580 ASE 42.41 bkl Zhou, Yuping verfasserin aut Sequence and expression analysis of the Arabidopsis IQM family 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues. Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213 Chen, Yuzhong verfasserin aut Yamamoto, Kotaro T. verfasserin aut Duan, Jun verfasserin aut Tian, Cheng-en verfasserin aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 32(2009), 1 vom: 23. Sept., Seite 191-198 (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:32 year:2009 number:1 day:23 month:09 pages:191-198 https://dx.doi.org/10.1007/s11738-009-0398-9 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 42.41 ASE AR 32 2009 1 23 09 191-198
language	English
source	Enthalten in Acta physiologiae plantarum 32(2009), 1 vom: 23. Sept., Seite 191-198 volume:32 year:2009 number:1 day:23 month:09 pages:191-198
sourceStr	Enthalten in Acta physiologiae plantarum 32(2009), 1 vom: 23. Sept., Seite 191-198 volume:32 year:2009 number:1 day:23 month:09 pages:191-198
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Calmodulin-binding protein Gene expression Heavy metal-induced protein IQM family Trichosanthin
dewey-raw	580
isfreeaccess_bool	false
container_title	Acta physiologiae plantarum
authorswithroles_txt_mv	Zhou, Yuping @@aut@@ Chen, Yuzhong @@aut@@ Yamamoto, Kotaro T. @@aut@@ Duan, Jun @@aut@@ Tian, Cheng-en @@aut@@
publishDateDaySort_date	2009-09-23T00:00:00Z
hierarchy_top_id	516024906
dewey-sort	3580
id	SPR02208374X
language_de	englisch
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author	Zhou, Yuping
spellingShingle	Zhou, Yuping ddc 580 bkl 42.41 misc Calmodulin-binding protein misc Gene expression misc Heavy metal-induced protein misc IQM family misc Trichosanthin Sequence and expression analysis of the Arabidopsis IQM family
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topic_title	580 ASE 42.41 bkl Sequence and expression analysis of the Arabidopsis IQM family Calmodulin-binding protein (dpeaa)DE-He213 Gene expression (dpeaa)DE-He213 Heavy metal-induced protein (dpeaa)DE-He213 IQM family (dpeaa)DE-He213 Trichosanthin (dpeaa)DE-He213
topic	ddc 580 bkl 42.41 misc Calmodulin-binding protein misc Gene expression misc Heavy metal-induced protein misc IQM family misc Trichosanthin
topic_unstemmed	ddc 580 bkl 42.41 misc Calmodulin-binding protein misc Gene expression misc Heavy metal-induced protein misc IQM family misc Trichosanthin
topic_browse	ddc 580 bkl 42.41 misc Calmodulin-binding protein misc Gene expression misc Heavy metal-induced protein misc IQM family misc Trichosanthin
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hierarchy_parent_title	Acta physiologiae plantarum
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title	Sequence and expression analysis of the Arabidopsis IQM family
ctrlnum	(DE-627)SPR02208374X (SPR)s11738-009-0398-9-e
title_full	Sequence and expression analysis of the Arabidopsis IQM family
author_sort	Zhou, Yuping
journal	Acta physiologiae plantarum
journalStr	Acta physiologiae plantarum
lang_code	eng
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author_browse	Zhou, Yuping Chen, Yuzhong Yamamoto, Kotaro T. Duan, Jun Tian, Cheng-en
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title_sort	sequence and expression analysis of the arabidopsis iqm family
title_auth	Sequence and expression analysis of the Arabidopsis IQM family
abstract	Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues.
abstractGer	Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues.
abstract_unstemmed	Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. These results suggest that each IQM family gene plays a different role in plant development and responses to environmental cues.
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title_short	Sequence and expression analysis of the Arabidopsis IQM family
url	https://dx.doi.org/10.1007/s11738-009-0398-9
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author2	Chen, Yuzhong Yamamoto, Kotaro T. Duan, Jun Tian, Cheng-en
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doi_str	10.1007/s11738-009-0398-9
up_date	2024-07-04T01:43:01.013Z
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fullrecord_marcxml	<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a22002652 4500</leader><controlfield tag="001">SPR02208374X</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20230519171806.0</controlfield><controlfield tag="007">cr uuu---uuuuu</controlfield><controlfield tag="008">201006s2009 xx \|\|\|\|\|o 00\| \|\|eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.1007/s11738-009-0398-9</subfield><subfield code="2">doi</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)SPR02208374X</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(SPR)s11738-009-0398-9-e</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="082" ind1="0" ind2="4"><subfield code="a">580</subfield><subfield code="q">ASE</subfield></datafield><datafield tag="084" ind1=" " ind2=" "><subfield code="a">42.41</subfield><subfield code="2">bkl</subfield></datafield><datafield tag="100" ind1="1" ind2=" "><subfield code="a">Zhou, Yuping</subfield><subfield code="e">verfasserin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Sequence and expression analysis of the Arabidopsis IQM family</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2009</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">Computermedien</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Online-Ressource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract Four major families have been found so far to possess the calmodulin binding IQ motif/s in plants: the IQD, the myosin, the CAMTA and the CNGC family. We have systematically identified and characterized a novel IQ motif-containing protein family, IQM, in Arabidopsis (Arabidopsis thaliana) using bioinformatics methods. IQM family contains six-member proteins (IQM1-6) which share sequence homology with a pea heavy metal-induced protein 6 and a ribosome-inactivating protein, trichosanthin, as well as IQ motif. IQM family can be divided into two groups, IQM3 and the other member proteins, based on sequence similarity and phylogenetic analysis of sequences. Though almost constitutive expression patterns were found in various plant organs of 6-week-old plants for IQM1 and 2, the other genes exhibited distinct organ-specific expression patterns. Light irradiation and treatment with heavy metals such as $ CdCl_{2} $ or Pb($ NO_{3} $)2 and high concentrations of mannitol or NaCl also changed expression of each IQM gene in a distinct manner in 7-day-old seedlings. However, treatment with various hormones, such as auxin, abscisic acid, gibberellin, methyl jasmonate and ethylene precursor, did not affect gene expression significantly. 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Sequence and expression analysis of the Arabidopsis IQM family

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