Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction
Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and...
Ausführliche Beschreibung
Autor*in: |
Ling, Hui [verfasserIn] Huang, Ning [verfasserIn] Wu, Qibing [verfasserIn] Su, Yachun [verfasserIn] Peng, Qiong [verfasserIn] Ahmed, Waqar [verfasserIn] Gao, Shiwu [verfasserIn] Su, Weihua [verfasserIn] Que, Youxiong [verfasserIn] Xu, Liping [verfasserIn] |
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E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2018 |
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Schlagwörter: |
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Übergeordnetes Werk: |
Enthalten in: Tropical plant biology - New York, NY : Springer, 2008, 11(2018), 3-4 vom: 17. Sept., Seite 163-176 |
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Übergeordnetes Werk: |
volume:11 ; year:2018 ; number:3-4 ; day:17 ; month:09 ; pages:163-176 |
Links: |
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DOI / URN: |
10.1007/s12042-018-9210-6 |
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Katalog-ID: |
SPR024096814 |
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520 | |a Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. | ||
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700 | 1 | |a Xu, Liping |e verfasserin |4 aut | |
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10.1007/s12042-018-9210-6 doi (DE-627)SPR024096814 (SPR)s12042-018-9210-6-e DE-627 ger DE-627 rakwb eng 570 ASE Ling, Hui verfasserin aut Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 Huang, Ning verfasserin aut Wu, Qibing verfasserin aut Su, Yachun verfasserin aut Peng, Qiong verfasserin aut Ahmed, Waqar verfasserin aut Gao, Shiwu verfasserin aut Su, Weihua verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Tropical plant biology New York, NY : Springer, 2008 11(2018), 3-4 vom: 17. Sept., Seite 163-176 (DE-627)581040597 (DE-600)2455624-5 1935-9764 nnns volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 https://dx.doi.org/10.1007/s12042-018-9210-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 11 2018 3-4 17 09 163-176 |
spelling |
10.1007/s12042-018-9210-6 doi (DE-627)SPR024096814 (SPR)s12042-018-9210-6-e DE-627 ger DE-627 rakwb eng 570 ASE Ling, Hui verfasserin aut Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 Huang, Ning verfasserin aut Wu, Qibing verfasserin aut Su, Yachun verfasserin aut Peng, Qiong verfasserin aut Ahmed, Waqar verfasserin aut Gao, Shiwu verfasserin aut Su, Weihua verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Tropical plant biology New York, NY : Springer, 2008 11(2018), 3-4 vom: 17. Sept., Seite 163-176 (DE-627)581040597 (DE-600)2455624-5 1935-9764 nnns volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 https://dx.doi.org/10.1007/s12042-018-9210-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 11 2018 3-4 17 09 163-176 |
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10.1007/s12042-018-9210-6 doi (DE-627)SPR024096814 (SPR)s12042-018-9210-6-e DE-627 ger DE-627 rakwb eng 570 ASE Ling, Hui verfasserin aut Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 Huang, Ning verfasserin aut Wu, Qibing verfasserin aut Su, Yachun verfasserin aut Peng, Qiong verfasserin aut Ahmed, Waqar verfasserin aut Gao, Shiwu verfasserin aut Su, Weihua verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Tropical plant biology New York, NY : Springer, 2008 11(2018), 3-4 vom: 17. Sept., Seite 163-176 (DE-627)581040597 (DE-600)2455624-5 1935-9764 nnns volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 https://dx.doi.org/10.1007/s12042-018-9210-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 11 2018 3-4 17 09 163-176 |
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10.1007/s12042-018-9210-6 doi (DE-627)SPR024096814 (SPR)s12042-018-9210-6-e DE-627 ger DE-627 rakwb eng 570 ASE Ling, Hui verfasserin aut Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 Huang, Ning verfasserin aut Wu, Qibing verfasserin aut Su, Yachun verfasserin aut Peng, Qiong verfasserin aut Ahmed, Waqar verfasserin aut Gao, Shiwu verfasserin aut Su, Weihua verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Tropical plant biology New York, NY : Springer, 2008 11(2018), 3-4 vom: 17. Sept., Seite 163-176 (DE-627)581040597 (DE-600)2455624-5 1935-9764 nnns volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 https://dx.doi.org/10.1007/s12042-018-9210-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 11 2018 3-4 17 09 163-176 |
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10.1007/s12042-018-9210-6 doi (DE-627)SPR024096814 (SPR)s12042-018-9210-6-e DE-627 ger DE-627 rakwb eng 570 ASE Ling, Hui verfasserin aut Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 Huang, Ning verfasserin aut Wu, Qibing verfasserin aut Su, Yachun verfasserin aut Peng, Qiong verfasserin aut Ahmed, Waqar verfasserin aut Gao, Shiwu verfasserin aut Su, Weihua verfasserin aut Que, Youxiong verfasserin aut Xu, Liping verfasserin aut Enthalten in Tropical plant biology New York, NY : Springer, 2008 11(2018), 3-4 vom: 17. Sept., Seite 163-176 (DE-627)581040597 (DE-600)2455624-5 1935-9764 nnns volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 https://dx.doi.org/10.1007/s12042-018-9210-6 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 11 2018 3-4 17 09 163-176 |
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Enthalten in Tropical plant biology 11(2018), 3-4 vom: 17. Sept., Seite 163-176 volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 |
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Enthalten in Tropical plant biology 11(2018), 3-4 vom: 17. Sept., Seite 163-176 volume:11 year:2018 number:3-4 day:17 month:09 pages:163-176 |
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spp. hybrid Mosaic disease Transcriptome host interactor qRT-PCR |
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Ling, Hui @@aut@@ Huang, Ning @@aut@@ Wu, Qibing @@aut@@ Su, Yachun @@aut@@ Peng, Qiong @@aut@@ Ahmed, Waqar @@aut@@ Gao, Shiwu @@aut@@ Su, Weihua @@aut@@ Que, Youxiong @@aut@@ Xu, Liping @@aut@@ |
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2018-09-17T00:00:00Z |
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Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. 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Ling, Hui |
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Ling, Hui ddc 570 misc spp. hybrid misc Mosaic disease misc Transcriptome misc host interactor misc qRT-PCR Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction |
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570 ASE Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction spp. hybrid (dpeaa)DE-He213 Mosaic disease (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 host interactor (dpeaa)DE-He213 qRT-PCR (dpeaa)DE-He213 |
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Ling, Hui Huang, Ning Wu, Qibing Su, Yachun Peng, Qiong Ahmed, Waqar Gao, Shiwu Su, Weihua Que, Youxiong Xu, Liping |
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title_sort |
transcriptional insights into the sugarcane-sorghum mosaic virus interaction |
title_auth |
Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction |
abstract |
Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. |
abstractGer |
Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. |
abstract_unstemmed |
Abstract Mosaic disease is a major viral disease that severely compromises sugar content and cane production. Among mosaic disease pathogens, Sorghum mosaic virus (SrMV) is the most prevalent one. To better understand the interaction mechanism between sugarcane and SrMV, samples of SrMV-infected and virus-free leaves of sugarcane cultivar ROC22 were deep sequenced and the sequencing data was confirmed by qRT-PCR. In total, 89,338 unigenes, 481 differentially expressed unigenes and 51 homologous sequences of Potyvirus host interactor (PHI) genes were obtained. The RNA-seq data implied that, the increase of SrMV replication from endoplasmic reticulum (ER) to chloroplast led to chloroplasts damage, following the initiation of differential expression of genes related to $ Ca^{2 +} $, ROS, cytokinin, auxin, and ethylene signaling, and also the transcription of some defense related genes. Among 51 PHIs, the upregulation of a calmodulin-related protein gene and an ethylene-inducible transcription factor gene in two SrMV-resistant and two SrMV-susceptible sugarcane cultivars under SrMV infection suggests that these two genes could be used as potential gene knockout targets for creating SrMV incompatible germplasm. Besides, based on its inverse expression pattern in the SrMV-resistant and -susceptible sugarcane cultivars, genes encoding heat shock protein 70, chloroplastic rieske Fe/S protein, reticulon homology domain protein and salicylic acid binding protein 3 might be used as the potential markers for identifying the resistance or susceptibility of sugarcane materials to SrMV. This study should help to understand the molecular mechanisms underlying SrMV-resistance of sugarcane cultivars. |
collection_details |
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container_issue |
3-4 |
title_short |
Transcriptional Insights into the Sugarcane-Sorghum mosaic virus Interaction |
url |
https://dx.doi.org/10.1007/s12042-018-9210-6 |
remote_bool |
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author2 |
Huang, Ning Wu, Qibing Su, Yachun Peng, Qiong Ahmed, Waqar Gao, Shiwu Su, Weihua Que, Youxiong Xu, Liping |
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Huang, Ning Wu, Qibing Su, Yachun Peng, Qiong Ahmed, Waqar Gao, Shiwu Su, Weihua Que, Youxiong Xu, Liping |
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doi_str |
10.1007/s12042-018-9210-6 |
up_date |
2024-07-03T23:26:00.178Z |
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score |
7.4013834 |