Fourmidable: a database for ant genomics

Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, ass...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Wurm, Yannick [verfasserIn] Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2009

Schlagwörter:	Gene Ontology Gene Expression Data Sequence Annotation Nucleotide Sequence Data Assembly Pipeline

Anmerkung:	© Wurm et al; licensee BioMed Central Ltd. 2009

Übergeordnetes Werk:	Enthalten in: BMC genomics - London : BioMed Central, 2000, 10(2009), 1 vom: 06. Jan.
Übergeordnetes Werk:	volume:10 ; year:2009 ; number:1 ; day:06 ; month:01

Links:	Volltext

DOI / URN:	10.1186/1471-2164-10-5

Katalog-ID:	SPR027041174

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allfields	10.1186/1471-2164-10-5 doi (DE-627)SPR027041174 (SPR)1471-2164-10-5-e DE-627 ger DE-627 rakwb eng Wurm, Yannick verfasserin aut Fourmidable: a database for ant genomics 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Wurm et al; licensee BioMed Central Ltd. 2009 Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213 Uva, Paolo aut Ricci, Frédéric aut Wang, John aut Jemielity, Stephanie aut Iseli, Christian aut Falquet, Laurent aut Keller, Laurent aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 06. Jan. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:06 month:01 https://dx.doi.org/10.1186/1471-2164-10-5 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 06 01
spelling	10.1186/1471-2164-10-5 doi (DE-627)SPR027041174 (SPR)1471-2164-10-5-e DE-627 ger DE-627 rakwb eng Wurm, Yannick verfasserin aut Fourmidable: a database for ant genomics 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Wurm et al; licensee BioMed Central Ltd. 2009 Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213 Uva, Paolo aut Ricci, Frédéric aut Wang, John aut Jemielity, Stephanie aut Iseli, Christian aut Falquet, Laurent aut Keller, Laurent aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 06. Jan. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:06 month:01 https://dx.doi.org/10.1186/1471-2164-10-5 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 06 01
allfields_unstemmed	10.1186/1471-2164-10-5 doi (DE-627)SPR027041174 (SPR)1471-2164-10-5-e DE-627 ger DE-627 rakwb eng Wurm, Yannick verfasserin aut Fourmidable: a database for ant genomics 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Wurm et al; licensee BioMed Central Ltd. 2009 Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213 Uva, Paolo aut Ricci, Frédéric aut Wang, John aut Jemielity, Stephanie aut Iseli, Christian aut Falquet, Laurent aut Keller, Laurent aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 06. Jan. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:06 month:01 https://dx.doi.org/10.1186/1471-2164-10-5 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 06 01
allfieldsGer	10.1186/1471-2164-10-5 doi (DE-627)SPR027041174 (SPR)1471-2164-10-5-e DE-627 ger DE-627 rakwb eng Wurm, Yannick verfasserin aut Fourmidable: a database for ant genomics 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Wurm et al; licensee BioMed Central Ltd. 2009 Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213 Uva, Paolo aut Ricci, Frédéric aut Wang, John aut Jemielity, Stephanie aut Iseli, Christian aut Falquet, Laurent aut Keller, Laurent aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 06. Jan. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:06 month:01 https://dx.doi.org/10.1186/1471-2164-10-5 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 06 01
allfieldsSound	10.1186/1471-2164-10-5 doi (DE-627)SPR027041174 (SPR)1471-2164-10-5-e DE-627 ger DE-627 rakwb eng Wurm, Yannick verfasserin aut Fourmidable: a database for ant genomics 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Wurm et al; licensee BioMed Central Ltd. 2009 Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213 Uva, Paolo aut Ricci, Frédéric aut Wang, John aut Jemielity, Stephanie aut Iseli, Christian aut Falquet, Laurent aut Keller, Laurent aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 06. Jan. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:06 month:01 https://dx.doi.org/10.1186/1471-2164-10-5 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 06 01
language	English
source	Enthalten in BMC genomics 10(2009), 1 vom: 06. Jan. volume:10 year:2009 number:1 day:06 month:01
sourceStr	Enthalten in BMC genomics 10(2009), 1 vom: 06. Jan. volume:10 year:2009 number:1 day:06 month:01
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Gene Ontology Gene Expression Data Sequence Annotation Nucleotide Sequence Data Assembly Pipeline
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authorswithroles_txt_mv	Wurm, Yannick @@aut@@ Uva, Paolo @@aut@@ Ricci, Frédéric @@aut@@ Wang, John @@aut@@ Jemielity, Stephanie @@aut@@ Iseli, Christian @@aut@@ Falquet, Laurent @@aut@@ Keller, Laurent @@aut@@
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author	Wurm, Yannick
spellingShingle	Wurm, Yannick misc Gene Ontology misc Gene Expression Data misc Sequence Annotation misc Nucleotide Sequence Data misc Assembly Pipeline Fourmidable: a database for ant genomics
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topic_title	Fourmidable: a database for ant genomics Gene Ontology (dpeaa)DE-He213 Gene Expression Data (dpeaa)DE-He213 Sequence Annotation (dpeaa)DE-He213 Nucleotide Sequence Data (dpeaa)DE-He213 Assembly Pipeline (dpeaa)DE-He213
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title	Fourmidable: a database for ant genomics
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title_full	Fourmidable: a database for ant genomics
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author_browse	Wurm, Yannick Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent
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title_sort	fourmidable: a database for ant genomics
title_auth	Fourmidable: a database for ant genomics
abstract	Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch © Wurm et al; licensee BioMed Central Ltd. 2009
abstractGer	Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch © Wurm et al; licensee BioMed Central Ltd. 2009
abstract_unstemmed	Background Fourmidable is an infrastructure to curate and share the emerging genetic, molecular, and functional genomic data and protocols for ants. Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. Fourmidable is publicly available at http://fourmidable.unil.ch © Wurm et al; licensee BioMed Central Ltd. 2009
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title_short	Fourmidable: a database for ant genomics
url	https://dx.doi.org/10.1186/1471-2164-10-5
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author2	Uva, Paolo Ricci, Frédéric Wang, John Jemielity, Stephanie Iseli, Christian Falquet, Laurent Keller, Laurent
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Description The Fourmidable assembly pipeline groups nucleotide sequences into clusters before independently assembling each cluster. Subsequently, assembled sequences are annotated via Interproscan and BLAST against general and insect-specific databases. Gene-specific information can be retrieved using gene identifiers, searching for similar sequences or browsing through inferred Gene Ontology annotations. The database will readily scale as ultra-high throughput sequence data and sequences from additional species become available. Conclusion Fourmidable currently houses EST data from two ant species and microarray gene expression data for one of these. 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Fourmidable: a database for ant genomics

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