Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5
Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Bertalan, Marcelo [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2009 |
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| Schlagwörter: |
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| Anmerkung: |
© Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
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| Übergeordnetes Werk: |
Enthalten in: BMC genomics - London : BioMed Central, 2000, 10(2009), 1 vom: 23. Sept. |
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| Übergeordnetes Werk: |
volume:10 ; year:2009 ; number:1 ; day:23 ; month:09 |
| Links: |
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| DOI / URN: |
10.1186/1471-2164-10-450 |
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| Katalog-ID: |
SPR027046117 |
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| 245 | 1 | 0 | |a Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 |
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| 520 | |a Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. | ||
| 650 | 4 | |a Horizontal Gene Transfer |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Endophytic Bacterium |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Genome Island |7 (dpeaa)DE-He213 | |
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| 700 | 1 | |a de Pádua, Vânia |4 aut | |
| 700 | 1 | |a Rouws, Luc |4 aut | |
| 700 | 1 | |a Rojas, Cristian |4 aut | |
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| 700 | 1 | |a Cardoso, Alexander |4 aut | |
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| 700 | 1 | |a Loureiro, Marcio Martins |4 aut | |
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| 700 | 1 | |a Seibel, Luiz |4 aut | |
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| 700 | 1 | |a Martins, Orlando |4 aut | |
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10.1186/1471-2164-10-450 doi (DE-627)SPR027046117 (SPR)1471-2164-10-450-e DE-627 ger DE-627 rakwb eng Bertalan, Marcelo verfasserin aut Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 Albano, Rodolpho aut de Pádua, Vânia aut Rouws, Luc aut Rojas, Cristian aut Hemerly, Adriana aut Teixeira, Kátia aut Schwab, Stefan aut Araujo, Jean aut Oliveira, André aut França, Leonardo aut Magalhães, Viviane aut Alquéres, Sylvia aut Cardoso, Alexander aut Almeida, Welington aut Loureiro, Marcio Martins aut Nogueira, Eduardo aut Cidade, Daniela aut Oliveira, Denise aut Simão, Tatiana aut Macedo, Jacyara aut Valadão, Ana aut Dreschsel, Marcela aut Freitas, Flávia aut Vidal, Marcia aut Guedes, Helma aut Rodrigues, Elisete aut Meneses, Carlos aut Brioso, Paulo aut Pozzer, Luciana aut Figueiredo, Daniel aut Montano, Helena aut Junior, Jadier aut de Souza Filho, Gonçalo aut Martin Quintana Flores, Victor aut Ferreira, Beatriz aut Branco, Alan aut Gonzalez, Paula aut Guillobel, Heloisa aut Lemos, Melissa aut Seibel, Luiz aut Macedo, José aut Alves-Ferreira, Marcio aut Sachetto-Martins, Gilberto aut Coelho, Ana aut Santos, Eidy aut Amaral, Gilda aut Neves, Anna aut Pacheco, Ana Beatriz aut Carvalho, Daniela aut Lery, Letícia aut Bisch, Paulo aut Rössle, Shaila C aut Ürményi, Turán aut Rael Pereira, Alessandra aut Silva, Rosane aut Rondinelli, Edson aut von Krüger, Wanda aut Martins, Orlando aut Baldani, José Ivo aut Ferreira, Paulo CG aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 23. Sept. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:23 month:09 https://dx.doi.org/10.1186/1471-2164-10-450 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 23 09 |
| spelling |
10.1186/1471-2164-10-450 doi (DE-627)SPR027046117 (SPR)1471-2164-10-450-e DE-627 ger DE-627 rakwb eng Bertalan, Marcelo verfasserin aut Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 Albano, Rodolpho aut de Pádua, Vânia aut Rouws, Luc aut Rojas, Cristian aut Hemerly, Adriana aut Teixeira, Kátia aut Schwab, Stefan aut Araujo, Jean aut Oliveira, André aut França, Leonardo aut Magalhães, Viviane aut Alquéres, Sylvia aut Cardoso, Alexander aut Almeida, Welington aut Loureiro, Marcio Martins aut Nogueira, Eduardo aut Cidade, Daniela aut Oliveira, Denise aut Simão, Tatiana aut Macedo, Jacyara aut Valadão, Ana aut Dreschsel, Marcela aut Freitas, Flávia aut Vidal, Marcia aut Guedes, Helma aut Rodrigues, Elisete aut Meneses, Carlos aut Brioso, Paulo aut Pozzer, Luciana aut Figueiredo, Daniel aut Montano, Helena aut Junior, Jadier aut de Souza Filho, Gonçalo aut Martin Quintana Flores, Victor aut Ferreira, Beatriz aut Branco, Alan aut Gonzalez, Paula aut Guillobel, Heloisa aut Lemos, Melissa aut Seibel, Luiz aut Macedo, José aut Alves-Ferreira, Marcio aut Sachetto-Martins, Gilberto aut Coelho, Ana aut Santos, Eidy aut Amaral, Gilda aut Neves, Anna aut Pacheco, Ana Beatriz aut Carvalho, Daniela aut Lery, Letícia aut Bisch, Paulo aut Rössle, Shaila C aut Ürményi, Turán aut Rael Pereira, Alessandra aut Silva, Rosane aut Rondinelli, Edson aut von Krüger, Wanda aut Martins, Orlando aut Baldani, José Ivo aut Ferreira, Paulo CG aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 23. Sept. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:23 month:09 https://dx.doi.org/10.1186/1471-2164-10-450 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 23 09 |
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10.1186/1471-2164-10-450 doi (DE-627)SPR027046117 (SPR)1471-2164-10-450-e DE-627 ger DE-627 rakwb eng Bertalan, Marcelo verfasserin aut Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 Albano, Rodolpho aut de Pádua, Vânia aut Rouws, Luc aut Rojas, Cristian aut Hemerly, Adriana aut Teixeira, Kátia aut Schwab, Stefan aut Araujo, Jean aut Oliveira, André aut França, Leonardo aut Magalhães, Viviane aut Alquéres, Sylvia aut Cardoso, Alexander aut Almeida, Welington aut Loureiro, Marcio Martins aut Nogueira, Eduardo aut Cidade, Daniela aut Oliveira, Denise aut Simão, Tatiana aut Macedo, Jacyara aut Valadão, Ana aut Dreschsel, Marcela aut Freitas, Flávia aut Vidal, Marcia aut Guedes, Helma aut Rodrigues, Elisete aut Meneses, Carlos aut Brioso, Paulo aut Pozzer, Luciana aut Figueiredo, Daniel aut Montano, Helena aut Junior, Jadier aut de Souza Filho, Gonçalo aut Martin Quintana Flores, Victor aut Ferreira, Beatriz aut Branco, Alan aut Gonzalez, Paula aut Guillobel, Heloisa aut Lemos, Melissa aut Seibel, Luiz aut Macedo, José aut Alves-Ferreira, Marcio aut Sachetto-Martins, Gilberto aut Coelho, Ana aut Santos, Eidy aut Amaral, Gilda aut Neves, Anna aut Pacheco, Ana Beatriz aut Carvalho, Daniela aut Lery, Letícia aut Bisch, Paulo aut Rössle, Shaila C aut Ürményi, Turán aut Rael Pereira, Alessandra aut Silva, Rosane aut Rondinelli, Edson aut von Krüger, Wanda aut Martins, Orlando aut Baldani, José Ivo aut Ferreira, Paulo CG aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 23. Sept. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:23 month:09 https://dx.doi.org/10.1186/1471-2164-10-450 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 23 09 |
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10.1186/1471-2164-10-450 doi (DE-627)SPR027046117 (SPR)1471-2164-10-450-e DE-627 ger DE-627 rakwb eng Bertalan, Marcelo verfasserin aut Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 Albano, Rodolpho aut de Pádua, Vânia aut Rouws, Luc aut Rojas, Cristian aut Hemerly, Adriana aut Teixeira, Kátia aut Schwab, Stefan aut Araujo, Jean aut Oliveira, André aut França, Leonardo aut Magalhães, Viviane aut Alquéres, Sylvia aut Cardoso, Alexander aut Almeida, Welington aut Loureiro, Marcio Martins aut Nogueira, Eduardo aut Cidade, Daniela aut Oliveira, Denise aut Simão, Tatiana aut Macedo, Jacyara aut Valadão, Ana aut Dreschsel, Marcela aut Freitas, Flávia aut Vidal, Marcia aut Guedes, Helma aut Rodrigues, Elisete aut Meneses, Carlos aut Brioso, Paulo aut Pozzer, Luciana aut Figueiredo, Daniel aut Montano, Helena aut Junior, Jadier aut de Souza Filho, Gonçalo aut Martin Quintana Flores, Victor aut Ferreira, Beatriz aut Branco, Alan aut Gonzalez, Paula aut Guillobel, Heloisa aut Lemos, Melissa aut Seibel, Luiz aut Macedo, José aut Alves-Ferreira, Marcio aut Sachetto-Martins, Gilberto aut Coelho, Ana aut Santos, Eidy aut Amaral, Gilda aut Neves, Anna aut Pacheco, Ana Beatriz aut Carvalho, Daniela aut Lery, Letícia aut Bisch, Paulo aut Rössle, Shaila C aut Ürményi, Turán aut Rael Pereira, Alessandra aut Silva, Rosane aut Rondinelli, Edson aut von Krüger, Wanda aut Martins, Orlando aut Baldani, José Ivo aut Ferreira, Paulo CG aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 23. Sept. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:23 month:09 https://dx.doi.org/10.1186/1471-2164-10-450 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 23 09 |
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10.1186/1471-2164-10-450 doi (DE-627)SPR027046117 (SPR)1471-2164-10-450-e DE-627 ger DE-627 rakwb eng Bertalan, Marcelo verfasserin aut Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 2009 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 Albano, Rodolpho aut de Pádua, Vânia aut Rouws, Luc aut Rojas, Cristian aut Hemerly, Adriana aut Teixeira, Kátia aut Schwab, Stefan aut Araujo, Jean aut Oliveira, André aut França, Leonardo aut Magalhães, Viviane aut Alquéres, Sylvia aut Cardoso, Alexander aut Almeida, Welington aut Loureiro, Marcio Martins aut Nogueira, Eduardo aut Cidade, Daniela aut Oliveira, Denise aut Simão, Tatiana aut Macedo, Jacyara aut Valadão, Ana aut Dreschsel, Marcela aut Freitas, Flávia aut Vidal, Marcia aut Guedes, Helma aut Rodrigues, Elisete aut Meneses, Carlos aut Brioso, Paulo aut Pozzer, Luciana aut Figueiredo, Daniel aut Montano, Helena aut Junior, Jadier aut de Souza Filho, Gonçalo aut Martin Quintana Flores, Victor aut Ferreira, Beatriz aut Branco, Alan aut Gonzalez, Paula aut Guillobel, Heloisa aut Lemos, Melissa aut Seibel, Luiz aut Macedo, José aut Alves-Ferreira, Marcio aut Sachetto-Martins, Gilberto aut Coelho, Ana aut Santos, Eidy aut Amaral, Gilda aut Neves, Anna aut Pacheco, Ana Beatriz aut Carvalho, Daniela aut Lery, Letícia aut Bisch, Paulo aut Rössle, Shaila C aut Ürményi, Turán aut Rael Pereira, Alessandra aut Silva, Rosane aut Rondinelli, Edson aut von Krüger, Wanda aut Martins, Orlando aut Baldani, José Ivo aut Ferreira, Paulo CG aut Enthalten in BMC genomics London : BioMed Central, 2000 10(2009), 1 vom: 23. Sept. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:10 year:2009 number:1 day:23 month:09 https://dx.doi.org/10.1186/1471-2164-10-450 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2009 1 23 09 |
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Bertalan, Marcelo @@aut@@ Albano, Rodolpho @@aut@@ de Pádua, Vânia @@aut@@ Rouws, Luc @@aut@@ Rojas, Cristian @@aut@@ Hemerly, Adriana @@aut@@ Teixeira, Kátia @@aut@@ Schwab, Stefan @@aut@@ Araujo, Jean @@aut@@ Oliveira, André @@aut@@ França, Leonardo @@aut@@ Magalhães, Viviane @@aut@@ Alquéres, Sylvia @@aut@@ Cardoso, Alexander @@aut@@ Almeida, Welington @@aut@@ Loureiro, Marcio Martins @@aut@@ Nogueira, Eduardo @@aut@@ Cidade, Daniela @@aut@@ Oliveira, Denise @@aut@@ Simão, Tatiana @@aut@@ Macedo, Jacyara @@aut@@ Valadão, Ana @@aut@@ Dreschsel, Marcela @@aut@@ Freitas, Flávia @@aut@@ Vidal, Marcia @@aut@@ Guedes, Helma @@aut@@ Rodrigues, Elisete @@aut@@ Meneses, Carlos @@aut@@ Brioso, Paulo @@aut@@ Pozzer, Luciana @@aut@@ Figueiredo, Daniel @@aut@@ Montano, Helena @@aut@@ Junior, Jadier @@aut@@ de Souza Filho, Gonçalo @@aut@@ Martin Quintana Flores, Victor @@aut@@ Ferreira, Beatriz @@aut@@ Branco, Alan @@aut@@ Gonzalez, Paula @@aut@@ Guillobel, Heloisa @@aut@@ Lemos, Melissa @@aut@@ Seibel, Luiz @@aut@@ Macedo, José @@aut@@ Alves-Ferreira, Marcio @@aut@@ Sachetto-Martins, Gilberto @@aut@@ Coelho, Ana @@aut@@ Santos, Eidy @@aut@@ Amaral, Gilda @@aut@@ Neves, Anna @@aut@@ Pacheco, Ana Beatriz @@aut@@ Carvalho, Daniela @@aut@@ Lery, Letícia @@aut@@ Bisch, Paulo @@aut@@ Rössle, Shaila C @@aut@@ Ürményi, Turán @@aut@@ Rael Pereira, Alessandra @@aut@@ Silva, Rosane @@aut@@ Rondinelli, Edson @@aut@@ von Krüger, Wanda @@aut@@ Martins, Orlando @@aut@@ Baldani, José Ivo @@aut@@ Ferreira, Paulo CG @@aut@@ |
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This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. 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Bertalan, Marcelo |
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Bertalan, Marcelo misc Horizontal Gene Transfer misc Endophytic Bacterium misc Genome Island misc Biological Nitrogen Fixation misc Accessory Region Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 |
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Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 Horizontal Gene Transfer (dpeaa)DE-He213 Endophytic Bacterium (dpeaa)DE-He213 Genome Island (dpeaa)DE-He213 Biological Nitrogen Fixation (dpeaa)DE-He213 Accessory Region (dpeaa)DE-He213 |
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Bertalan, Marcelo Albano, Rodolpho de Pádua, Vânia Rouws, Luc Rojas, Cristian Hemerly, Adriana Teixeira, Kátia Schwab, Stefan Araujo, Jean Oliveira, André França, Leonardo Magalhães, Viviane Alquéres, Sylvia Cardoso, Alexander Almeida, Welington Loureiro, Marcio Martins Nogueira, Eduardo Cidade, Daniela Oliveira, Denise Simão, Tatiana Macedo, Jacyara Valadão, Ana Dreschsel, Marcela Freitas, Flávia Vidal, Marcia Guedes, Helma Rodrigues, Elisete Meneses, Carlos Brioso, Paulo Pozzer, Luciana Figueiredo, Daniel Montano, Helena Junior, Jadier de Souza Filho, Gonçalo Martin Quintana Flores, Victor Ferreira, Beatriz Branco, Alan Gonzalez, Paula Guillobel, Heloisa Lemos, Melissa Seibel, Luiz Macedo, José Alves-Ferreira, Marcio Sachetto-Martins, Gilberto Coelho, Ana Santos, Eidy Amaral, Gilda Neves, Anna Pacheco, Ana Beatriz Carvalho, Daniela Lery, Letícia Bisch, Paulo Rössle, Shaila C Ürményi, Turán Rael Pereira, Alessandra Silva, Rosane Rondinelli, Edson von Krüger, Wanda Martins, Orlando Baldani, José Ivo Ferreira, Paulo CG |
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complete genome sequence of the sugarcane nitrogen-fixing endophyte gluconacetobacter diazotrophicus pal5 |
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Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus Pal5 |
| abstract |
Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
| abstractGer |
Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
| abstract_unstemmed |
Background Gluconacetobacter diazotrophicus Pal5 is an endophytic diazotrophic bacterium that lives in association with sugarcane plants. It has important biotechnological features such as nitrogen fixation, plant growth promotion, sugar metabolism pathways, secretion of organic acids, synthesis of auxin and the occurrence of bacteriocins. Results Gluconacetobacter diazotrophicus Pal5 is the third diazotrophic endophytic bacterium to be completely sequenced. Its genome is composed of a 3.9 Mb chromosome and 2 plasmids of 16.6 and 38.8 kb, respectively. We annotated 3,938 coding sequences which reveal several characteristics related to the endophytic lifestyle such as nitrogen fixation, plant growth promotion, sugar metabolism, transport systems, synthesis of auxin and the occurrence of bacteriocins. Genomic analysis identified a core component of 894 genes shared with phylogenetically related bacteria. Gene clusters for gum-like polysaccharide biosynthesis, tad pilus, quorum sensing, for modulation of plant growth by indole acetic acid and mechanisms involved in tolerance to acidic conditions were identified and may be related to the sugarcane endophytic and plant-growth promoting traits of G. diazotrophicus. An accessory component of at least 851 genes distributed in genome islands was identified, and was most likely acquired by horizontal gene transfer. This portion of the genome has likely contributed to adaptation to the plant habitat. Conclusion The genome data offer an important resource of information that can be used to manipulate plant/bacterium interactions with the aim of improving sugarcane crop production and other biotechnological applications. © Bertalan et al; licensee BioMed Central Ltd. 2009. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
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