High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL

Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety colle...
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Autor*in:	Delourme, Régine [verfasserIn] Falentin, Cyril Fomeju, Berline Fopa Boillot, Marie Lassalle, Gilles André, Isabelle Duarte, Jorge Gauthier, Valérie Lucante, Nicole Marty, Amandine Pauchon, Maryline Pichon, Jean-Philippe Ribière, Nicolas Trotoux, Gwenn Blanchard, Philippe Rivière, Nathalie Martinant, Jean-Pierre Pauquet, Jérôme

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2013

Schlagwörter:	Linkage Disequilibrium Linkage Group Double Haploid Oilseed Rape Erucic Acid

Anmerkung:	© Delourme et al; licensee BioMed Central Ltd. 2013

Übergeordnetes Werk:	Enthalten in: BMC genomics - London : BioMed Central, 2000, 14(2013), 1 vom: 22. Feb.
Übergeordnetes Werk:	volume:14 ; year:2013 ; number:1 ; day:22 ; month:02

Links:	Volltext

DOI / URN:	10.1186/1471-2164-14-120

Katalog-ID:	SPR027076490

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520			\|a Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses.
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700	1		\|a Pauquet, Jérôme \|4 aut
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allfields	10.1186/1471-2164-14-120 doi (DE-627)SPR027076490 (SPR)1471-2164-14-120-e DE-627 ger DE-627 rakwb eng Delourme, Régine verfasserin aut High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Delourme et al; licensee BioMed Central Ltd. 2013 Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213 Falentin, Cyril aut Fomeju, Berline Fopa aut Boillot, Marie aut Lassalle, Gilles aut André, Isabelle aut Duarte, Jorge aut Gauthier, Valérie aut Lucante, Nicole aut Marty, Amandine aut Pauchon, Maryline aut Pichon, Jean-Philippe aut Ribière, Nicolas aut Trotoux, Gwenn aut Blanchard, Philippe aut Rivière, Nathalie aut Martinant, Jean-Pierre aut Pauquet, Jérôme aut Enthalten in BMC genomics London : BioMed Central, 2000 14(2013), 1 vom: 22. Feb. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:14 year:2013 number:1 day:22 month:02 https://dx.doi.org/10.1186/1471-2164-14-120 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2013 1 22 02
spelling	10.1186/1471-2164-14-120 doi (DE-627)SPR027076490 (SPR)1471-2164-14-120-e DE-627 ger DE-627 rakwb eng Delourme, Régine verfasserin aut High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Delourme et al; licensee BioMed Central Ltd. 2013 Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213 Falentin, Cyril aut Fomeju, Berline Fopa aut Boillot, Marie aut Lassalle, Gilles aut André, Isabelle aut Duarte, Jorge aut Gauthier, Valérie aut Lucante, Nicole aut Marty, Amandine aut Pauchon, Maryline aut Pichon, Jean-Philippe aut Ribière, Nicolas aut Trotoux, Gwenn aut Blanchard, Philippe aut Rivière, Nathalie aut Martinant, Jean-Pierre aut Pauquet, Jérôme aut Enthalten in BMC genomics London : BioMed Central, 2000 14(2013), 1 vom: 22. Feb. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:14 year:2013 number:1 day:22 month:02 https://dx.doi.org/10.1186/1471-2164-14-120 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2013 1 22 02
allfields_unstemmed	10.1186/1471-2164-14-120 doi (DE-627)SPR027076490 (SPR)1471-2164-14-120-e DE-627 ger DE-627 rakwb eng Delourme, Régine verfasserin aut High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Delourme et al; licensee BioMed Central Ltd. 2013 Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213 Falentin, Cyril aut Fomeju, Berline Fopa aut Boillot, Marie aut Lassalle, Gilles aut André, Isabelle aut Duarte, Jorge aut Gauthier, Valérie aut Lucante, Nicole aut Marty, Amandine aut Pauchon, Maryline aut Pichon, Jean-Philippe aut Ribière, Nicolas aut Trotoux, Gwenn aut Blanchard, Philippe aut Rivière, Nathalie aut Martinant, Jean-Pierre aut Pauquet, Jérôme aut Enthalten in BMC genomics London : BioMed Central, 2000 14(2013), 1 vom: 22. Feb. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:14 year:2013 number:1 day:22 month:02 https://dx.doi.org/10.1186/1471-2164-14-120 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2013 1 22 02
allfieldsGer	10.1186/1471-2164-14-120 doi (DE-627)SPR027076490 (SPR)1471-2164-14-120-e DE-627 ger DE-627 rakwb eng Delourme, Régine verfasserin aut High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Delourme et al; licensee BioMed Central Ltd. 2013 Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213 Falentin, Cyril aut Fomeju, Berline Fopa aut Boillot, Marie aut Lassalle, Gilles aut André, Isabelle aut Duarte, Jorge aut Gauthier, Valérie aut Lucante, Nicole aut Marty, Amandine aut Pauchon, Maryline aut Pichon, Jean-Philippe aut Ribière, Nicolas aut Trotoux, Gwenn aut Blanchard, Philippe aut Rivière, Nathalie aut Martinant, Jean-Pierre aut Pauquet, Jérôme aut Enthalten in BMC genomics London : BioMed Central, 2000 14(2013), 1 vom: 22. Feb. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:14 year:2013 number:1 day:22 month:02 https://dx.doi.org/10.1186/1471-2164-14-120 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2013 1 22 02
allfieldsSound	10.1186/1471-2164-14-120 doi (DE-627)SPR027076490 (SPR)1471-2164-14-120-e DE-627 ger DE-627 rakwb eng Delourme, Régine verfasserin aut High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Delourme et al; licensee BioMed Central Ltd. 2013 Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213 Falentin, Cyril aut Fomeju, Berline Fopa aut Boillot, Marie aut Lassalle, Gilles aut André, Isabelle aut Duarte, Jorge aut Gauthier, Valérie aut Lucante, Nicole aut Marty, Amandine aut Pauchon, Maryline aut Pichon, Jean-Philippe aut Ribière, Nicolas aut Trotoux, Gwenn aut Blanchard, Philippe aut Rivière, Nathalie aut Martinant, Jean-Pierre aut Pauquet, Jérôme aut Enthalten in BMC genomics London : BioMed Central, 2000 14(2013), 1 vom: 22. Feb. (DE-627)326644954 (DE-600)2041499-7 1471-2164 nnns volume:14 year:2013 number:1 day:22 month:02 https://dx.doi.org/10.1186/1471-2164-14-120 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2013 1 22 02
language	English
source	Enthalten in BMC genomics 14(2013), 1 vom: 22. Feb. volume:14 year:2013 number:1 day:22 month:02
sourceStr	Enthalten in BMC genomics 14(2013), 1 vom: 22. Feb. volume:14 year:2013 number:1 day:22 month:02
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Linkage Disequilibrium Linkage Group Double Haploid Oilseed Rape Erucic Acid
isfreeaccess_bool	true
container_title	BMC genomics
authorswithroles_txt_mv	Delourme, Régine @@aut@@ Falentin, Cyril @@aut@@ Fomeju, Berline Fopa @@aut@@ Boillot, Marie @@aut@@ Lassalle, Gilles @@aut@@ André, Isabelle @@aut@@ Duarte, Jorge @@aut@@ Gauthier, Valérie @@aut@@ Lucante, Nicole @@aut@@ Marty, Amandine @@aut@@ Pauchon, Maryline @@aut@@ Pichon, Jean-Philippe @@aut@@ Ribière, Nicolas @@aut@@ Trotoux, Gwenn @@aut@@ Blanchard, Philippe @@aut@@ Rivière, Nathalie @@aut@@ Martinant, Jean-Pierre @@aut@@ Pauquet, Jérôme @@aut@@
publishDateDaySort_date	2013-02-22T00:00:00Z
hierarchy_top_id	326644954
id	SPR027076490
language_de	englisch
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Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. 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author	Delourme, Régine
spellingShingle	Delourme, Régine misc Linkage Disequilibrium misc Linkage Group misc Double Haploid misc Oilseed Rape misc Erucic Acid High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL
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topic_title	High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL Linkage Disequilibrium (dpeaa)DE-He213 Linkage Group (dpeaa)DE-He213 Double Haploid (dpeaa)DE-He213 Oilseed Rape (dpeaa)DE-He213 Erucic Acid (dpeaa)DE-He213
topic	misc Linkage Disequilibrium misc Linkage Group misc Double Haploid misc Oilseed Rape misc Erucic Acid
topic_unstemmed	misc Linkage Disequilibrium misc Linkage Group misc Double Haploid misc Oilseed Rape misc Erucic Acid
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title	High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL
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title_full	High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL
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author_browse	Delourme, Régine Falentin, Cyril Fomeju, Berline Fopa Boillot, Marie Lassalle, Gilles André, Isabelle Duarte, Jorge Gauthier, Valérie Lucante, Nicole Marty, Amandine Pauchon, Maryline Pichon, Jean-Philippe Ribière, Nicolas Trotoux, Gwenn Blanchard, Philippe Rivière, Nathalie Martinant, Jean-Pierre Pauquet, Jérôme
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author-letter	Delourme, Régine
doi_str_mv	10.1186/1471-2164-14-120
title_sort	high-density snp-based genetic map development and linkage disequilibrium assessment in brassica napusl
title_auth	High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL
abstract	Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. © Delourme et al; licensee BioMed Central Ltd. 2013
abstractGer	Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. © Delourme et al; licensee BioMed Central Ltd. 2013
abstract_unstemmed	Background High density genetic maps built with SNP markers that are polymorphic in various genetic backgrounds are very useful for studying the genetics of agronomical traits as well as genome organization and evolution. Simultaneous dense SNP genotyping of segregating populations and variety collections was applied to oilseed rape (Brassica napus L.) to obtain a high density genetic map for this species and to study the linkage disequilibrium pattern. Results We developed an integrated genetic map for oilseed rape by high throughput SNP genotyping of four segregating doubled haploid populations. A very high level of collinearity was observed between the four individual maps and a large number of markers (>59%) was common to more than two maps. The precise integrated map comprises 5764 SNP and 1603 PCR markers. With a total genetic length of 2250 cM, the integrated map contains a density of 3.27 markers (2.56 SNP) per cM. Genotyping of these mapped SNP markers in oilseed rape collections allowed polymorphism level and linkage disequilibrium (LD) to be studied across the different collections (winter vs spring, different seed quality types) and along the linkage groups. Overall, polymorphism level was higher and LD decayed faster in spring than in “00” winter oilseed rape types but this was shown to vary greatly along the linkage groups. Conclusions Our study provides a valuable resource for further genetic studies using linkage or association mapping, for marker assisted breeding and for Brassica napus sequence assembly and genome organization analyses. © Delourme et al; licensee BioMed Central Ltd. 2013
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title_short	High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL
url	https://dx.doi.org/10.1186/1471-2164-14-120
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author2	Falentin, Cyril Fomeju, Berline Fopa Boillot, Marie Lassalle, Gilles André, Isabelle Duarte, Jorge Gauthier, Valérie Lucante, Nicole Marty, Amandine Pauchon, Maryline Pichon, Jean-Philippe Ribière, Nicolas Trotoux, Gwenn Blanchard, Philippe Rivière, Nathalie Martinant, Jean-Pierre Pauquet, Jérôme
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High-density SNP-based genetic map development and linkage disequilibrium assessment in Brassica napusL

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