SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies
Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germp...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Vleeshouwers, Vivianne GAA [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2011 |
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| Schlagwörter: |
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| Anmerkung: |
© Vleeshouwers et al; licensee BioMed Central Ltd. 2011 |
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| Übergeordnetes Werk: |
Enthalten in: BMC plant biology - London : BioMed Central, 2001, 11(2011), 1 vom: 18. Aug. |
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| Übergeordnetes Werk: |
volume:11 ; year:2011 ; number:1 ; day:18 ; month:08 |
| Links: |
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| DOI / URN: |
10.1186/1471-2229-11-116 |
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| Katalog-ID: |
SPR027287130 |
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| 100 | 1 | |a Vleeshouwers, Vivianne GAA |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies |
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| 520 | |a Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. | ||
| 650 | 4 | |a Late Blight |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Solanum Species |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Resistance Data |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Late Blight Resistance |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Detach Leaf Assay |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Finkers, Richard |4 aut | |
| 700 | 1 | |a Budding, Dirk |4 aut | |
| 700 | 1 | |a Visser, Marcel |4 aut | |
| 700 | 1 | |a Jacobs, Mirjam MJ |4 aut | |
| 700 | 1 | |a van Berloo, Ralph |4 aut | |
| 700 | 1 | |a Pel, Mathieu |4 aut | |
| 700 | 1 | |a Champouret, Nicolas |4 aut | |
| 700 | 1 | |a Bakker, Erin |4 aut | |
| 700 | 1 | |a Krenek, Pavel |4 aut | |
| 700 | 1 | |a Rietman, Hendrik |4 aut | |
| 700 | 1 | |a Huigen, DirkJan |4 aut | |
| 700 | 1 | |a Hoekstra, Roel |4 aut | |
| 700 | 1 | |a Goverse, Aska |4 aut | |
| 700 | 1 | |a Vosman, Ben |4 aut | |
| 700 | 1 | |a Jacobsen, Evert |4 aut | |
| 700 | 1 | |a Visser, Richard GF |4 aut | |
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| 856 | 4 | 0 | |u https://dx.doi.org/10.1186/1471-2229-11-116 |z kostenfrei |3 Volltext |
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10.1186/1471-2229-11-116 doi (DE-627)SPR027287130 (SPR)1471-2229-11-116-e DE-627 ger DE-627 rakwb eng Vleeshouwers, Vivianne GAA verfasserin aut SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 Finkers, Richard aut Budding, Dirk aut Visser, Marcel aut Jacobs, Mirjam MJ aut van Berloo, Ralph aut Pel, Mathieu aut Champouret, Nicolas aut Bakker, Erin aut Krenek, Pavel aut Rietman, Hendrik aut Huigen, DirkJan aut Hoekstra, Roel aut Goverse, Aska aut Vosman, Ben aut Jacobsen, Evert aut Visser, Richard GF aut Enthalten in BMC plant biology London : BioMed Central, 2001 11(2011), 1 vom: 18. Aug. (DE-627)335489060 (DE-600)2059868-3 1471-2229 nnns volume:11 year:2011 number:1 day:18 month:08 https://dx.doi.org/10.1186/1471-2229-11-116 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2011 1 18 08 |
| spelling |
10.1186/1471-2229-11-116 doi (DE-627)SPR027287130 (SPR)1471-2229-11-116-e DE-627 ger DE-627 rakwb eng Vleeshouwers, Vivianne GAA verfasserin aut SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 Finkers, Richard aut Budding, Dirk aut Visser, Marcel aut Jacobs, Mirjam MJ aut van Berloo, Ralph aut Pel, Mathieu aut Champouret, Nicolas aut Bakker, Erin aut Krenek, Pavel aut Rietman, Hendrik aut Huigen, DirkJan aut Hoekstra, Roel aut Goverse, Aska aut Vosman, Ben aut Jacobsen, Evert aut Visser, Richard GF aut Enthalten in BMC plant biology London : BioMed Central, 2001 11(2011), 1 vom: 18. Aug. (DE-627)335489060 (DE-600)2059868-3 1471-2229 nnns volume:11 year:2011 number:1 day:18 month:08 https://dx.doi.org/10.1186/1471-2229-11-116 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2011 1 18 08 |
| allfields_unstemmed |
10.1186/1471-2229-11-116 doi (DE-627)SPR027287130 (SPR)1471-2229-11-116-e DE-627 ger DE-627 rakwb eng Vleeshouwers, Vivianne GAA verfasserin aut SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 Finkers, Richard aut Budding, Dirk aut Visser, Marcel aut Jacobs, Mirjam MJ aut van Berloo, Ralph aut Pel, Mathieu aut Champouret, Nicolas aut Bakker, Erin aut Krenek, Pavel aut Rietman, Hendrik aut Huigen, DirkJan aut Hoekstra, Roel aut Goverse, Aska aut Vosman, Ben aut Jacobsen, Evert aut Visser, Richard GF aut Enthalten in BMC plant biology London : BioMed Central, 2001 11(2011), 1 vom: 18. Aug. (DE-627)335489060 (DE-600)2059868-3 1471-2229 nnns volume:11 year:2011 number:1 day:18 month:08 https://dx.doi.org/10.1186/1471-2229-11-116 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2011 1 18 08 |
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10.1186/1471-2229-11-116 doi (DE-627)SPR027287130 (SPR)1471-2229-11-116-e DE-627 ger DE-627 rakwb eng Vleeshouwers, Vivianne GAA verfasserin aut SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 Finkers, Richard aut Budding, Dirk aut Visser, Marcel aut Jacobs, Mirjam MJ aut van Berloo, Ralph aut Pel, Mathieu aut Champouret, Nicolas aut Bakker, Erin aut Krenek, Pavel aut Rietman, Hendrik aut Huigen, DirkJan aut Hoekstra, Roel aut Goverse, Aska aut Vosman, Ben aut Jacobsen, Evert aut Visser, Richard GF aut Enthalten in BMC plant biology London : BioMed Central, 2001 11(2011), 1 vom: 18. Aug. (DE-627)335489060 (DE-600)2059868-3 1471-2229 nnns volume:11 year:2011 number:1 day:18 month:08 https://dx.doi.org/10.1186/1471-2229-11-116 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2011 1 18 08 |
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10.1186/1471-2229-11-116 doi (DE-627)SPR027287130 (SPR)1471-2229-11-116-e DE-627 ger DE-627 rakwb eng Vleeshouwers, Vivianne GAA verfasserin aut SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 Finkers, Richard aut Budding, Dirk aut Visser, Marcel aut Jacobs, Mirjam MJ aut van Berloo, Ralph aut Pel, Mathieu aut Champouret, Nicolas aut Bakker, Erin aut Krenek, Pavel aut Rietman, Hendrik aut Huigen, DirkJan aut Hoekstra, Roel aut Goverse, Aska aut Vosman, Ben aut Jacobsen, Evert aut Visser, Richard GF aut Enthalten in BMC plant biology London : BioMed Central, 2001 11(2011), 1 vom: 18. Aug. (DE-627)335489060 (DE-600)2059868-3 1471-2229 nnns volume:11 year:2011 number:1 day:18 month:08 https://dx.doi.org/10.1186/1471-2229-11-116 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2011 1 18 08 |
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Enthalten in BMC plant biology 11(2011), 1 vom: 18. Aug. volume:11 year:2011 number:1 day:18 month:08 |
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Vleeshouwers, Vivianne GAA @@aut@@ Finkers, Richard @@aut@@ Budding, Dirk @@aut@@ Visser, Marcel @@aut@@ Jacobs, Mirjam MJ @@aut@@ van Berloo, Ralph @@aut@@ Pel, Mathieu @@aut@@ Champouret, Nicolas @@aut@@ Bakker, Erin @@aut@@ Krenek, Pavel @@aut@@ Rietman, Hendrik @@aut@@ Huigen, DirkJan @@aut@@ Hoekstra, Roel @@aut@@ Goverse, Aska @@aut@@ Vosman, Ben @@aut@@ Jacobsen, Evert @@aut@@ Visser, Richard GF @@aut@@ |
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The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. 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Vleeshouwers, Vivianne GAA |
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Vleeshouwers, Vivianne GAA misc Late Blight misc Solanum Species misc Resistance Data misc Late Blight Resistance misc Detach Leaf Assay SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies |
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SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies Late Blight (dpeaa)DE-He213 Solanum Species (dpeaa)DE-He213 Resistance Data (dpeaa)DE-He213 Late Blight Resistance (dpeaa)DE-He213 Detach Leaf Assay (dpeaa)DE-He213 |
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Vleeshouwers, Vivianne GAA Finkers, Richard Budding, Dirk Visser, Marcel Jacobs, Mirjam MJ van Berloo, Ralph Pel, Mathieu Champouret, Nicolas Bakker, Erin Krenek, Pavel Rietman, Hendrik Huigen, DirkJan Hoekstra, Roel Goverse, Aska Vosman, Ben Jacobsen, Evert Visser, Richard GF |
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solrgene: an online database to explore disease resistance genes in tuber-bearing solanumspecies |
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SolRgene: an online database to explore disease resistance genes in tuber-bearing Solanumspecies |
| abstract |
Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 |
| abstractGer |
Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 |
| abstract_unstemmed |
Background The cultivated potato (Solanum tuberosum L.) is an important food crop, but highly susceptible to many pathogens. The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. Complemented with R gene sequence data and phylogenetic tools, SolRgene can be considered the primary resource for information on R genes from potato and wild tuber-bearing relatives. © Vleeshouwers et al; licensee BioMed Central Ltd. 2011 |
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Finkers, Richard Budding, Dirk Visser, Marcel Jacobs, Mirjam MJ van Berloo, Ralph Pel, Mathieu Champouret, Nicolas Bakker, Erin Krenek, Pavel Rietman, Hendrik Huigen, DirkJan Hoekstra, Roel Goverse, Aska Vosman, Ben Jacobsen, Evert Visser, Richard GF |
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The major threat to potato production is the Irish famine pathogen Phytophthora infestans, which causes the devastating late blight disease. Potato breeding makes use of germplasm from wild relatives (wild germplasm) to introduce resistances into cultivated potato. The Solanum section Petota comprises tuber-bearing species that are potential donors of new disease resistance genes. The aim of this study was to explore Solanum section Petota for resistance genes and generate a widely accessible resource that is useful for studying and implementing disease resistance in potato. Description The SolRgene database contains data on resistance to P. infestans and presence of R genes and R gene homologues in Solanum section Petota. We have explored Solanum section Petota for resistance to late blight in high throughput disease tests under various laboratory conditions and in field trials. From resistant wild germplasm, segregating populations were generated and assessed for the presence of resistance genes. All these data have been entered into the SolRgene database. To facilitate genetic and resistance gene evolution studies, phylogenetic data of the entire SolRgene collection are included, as well as a tool for generating phylogenetic trees of selected groups of germplasm. Data from resistance gene allele-mining studies are incorporated, which enables detection of R gene homologs in related germplasm. Using these resources, various resistance genes have been detected and some of these have been cloned, whereas others are in the cloning pipeline. All this information is stored in the online SolRgene database, which allows users to query resistance data, sequences, passport data of the accessions, and phylogenic classifications. Conclusion Solanum section Petota forms the basis of the SolRgene database, which contains a collection of resistance data of an unprecedented size and precision. 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