Genome wide association study identifies KCNMA1contributing to human obesity
Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the popu...
Ausführliche Beschreibung
Autor*in: |
Jiao, Hong [verfasserIn] |
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E-Artikel |
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Sprache: |
Englisch |
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2011 |
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Anmerkung: |
© Jiao et al; licensee BioMed Central Ltd. 2011 |
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Übergeordnetes Werk: |
Enthalten in: BMC medical genomics - London : BioMed Central, 2008, 4(2011), 1 vom: 28. Juni |
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Übergeordnetes Werk: |
volume:4 ; year:2011 ; number:1 ; day:28 ; month:06 |
Links: |
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DOI / URN: |
10.1186/1755-8794-4-51 |
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Katalog-ID: |
SPR028467019 |
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245 | 1 | 0 | |a Genome wide association study identifies KCNMA1contributing to human obesity |
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520 | |a Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. | ||
650 | 4 | |a Obesity |7 (dpeaa)DE-He213 | |
650 | 4 | |a Morbid Obesity |7 (dpeaa)DE-He213 | |
650 | 4 | |a Susceptibility Locus |7 (dpeaa)DE-He213 | |
650 | 4 | |a Allelic Association |7 (dpeaa)DE-He213 | |
650 | 4 | |a Obesity Gene |7 (dpeaa)DE-He213 | |
700 | 1 | |a Arner, Peter |4 aut | |
700 | 1 | |a Hoffstedt, Johan |4 aut | |
700 | 1 | |a Brodin, David |4 aut | |
700 | 1 | |a Dubern, Beatrice |4 aut | |
700 | 1 | |a Czernichow, Sébastien |4 aut | |
700 | 1 | |a van't Hooft, Ferdinand |4 aut | |
700 | 1 | |a Axelsson, Tomas |4 aut | |
700 | 1 | |a Pedersen, Oluf |4 aut | |
700 | 1 | |a Hansen, Torben |4 aut | |
700 | 1 | |a Sørensen, Thorkild IA |4 aut | |
700 | 1 | |a Hebebrand, Johannes |4 aut | |
700 | 1 | |a Kere, Juha |4 aut | |
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700 | 1 | |a Hamsten, Anders |4 aut | |
700 | 1 | |a Clement, Karine |4 aut | |
700 | 1 | |a Dahlman, Ingrid |4 aut | |
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10.1186/1755-8794-4-51 doi (DE-627)SPR028467019 (SPR)1755-8794-4-51-e DE-627 ger DE-627 rakwb eng Jiao, Hong verfasserin aut Genome wide association study identifies KCNMA1contributing to human obesity 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jiao et al; licensee BioMed Central Ltd. 2011 Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. Obesity (dpeaa)DE-He213 Morbid Obesity (dpeaa)DE-He213 Susceptibility Locus (dpeaa)DE-He213 Allelic Association (dpeaa)DE-He213 Obesity Gene (dpeaa)DE-He213 Arner, Peter aut Hoffstedt, Johan aut Brodin, David aut Dubern, Beatrice aut Czernichow, Sébastien aut van't Hooft, Ferdinand aut Axelsson, Tomas aut Pedersen, Oluf aut Hansen, Torben aut Sørensen, Thorkild IA aut Hebebrand, Johannes aut Kere, Juha aut Dahlman-Wright, Karin aut Hamsten, Anders aut Clement, Karine aut Dahlman, Ingrid aut Enthalten in BMC medical genomics London : BioMed Central, 2008 4(2011), 1 vom: 28. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:4 year:2011 number:1 day:28 month:06 https://dx.doi.org/10.1186/1755-8794-4-51 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 4 2011 1 28 06 |
spelling |
10.1186/1755-8794-4-51 doi (DE-627)SPR028467019 (SPR)1755-8794-4-51-e DE-627 ger DE-627 rakwb eng Jiao, Hong verfasserin aut Genome wide association study identifies KCNMA1contributing to human obesity 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jiao et al; licensee BioMed Central Ltd. 2011 Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. Obesity (dpeaa)DE-He213 Morbid Obesity (dpeaa)DE-He213 Susceptibility Locus (dpeaa)DE-He213 Allelic Association (dpeaa)DE-He213 Obesity Gene (dpeaa)DE-He213 Arner, Peter aut Hoffstedt, Johan aut Brodin, David aut Dubern, Beatrice aut Czernichow, Sébastien aut van't Hooft, Ferdinand aut Axelsson, Tomas aut Pedersen, Oluf aut Hansen, Torben aut Sørensen, Thorkild IA aut Hebebrand, Johannes aut Kere, Juha aut Dahlman-Wright, Karin aut Hamsten, Anders aut Clement, Karine aut Dahlman, Ingrid aut Enthalten in BMC medical genomics London : BioMed Central, 2008 4(2011), 1 vom: 28. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:4 year:2011 number:1 day:28 month:06 https://dx.doi.org/10.1186/1755-8794-4-51 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 4 2011 1 28 06 |
allfields_unstemmed |
10.1186/1755-8794-4-51 doi (DE-627)SPR028467019 (SPR)1755-8794-4-51-e DE-627 ger DE-627 rakwb eng Jiao, Hong verfasserin aut Genome wide association study identifies KCNMA1contributing to human obesity 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jiao et al; licensee BioMed Central Ltd. 2011 Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. Obesity (dpeaa)DE-He213 Morbid Obesity (dpeaa)DE-He213 Susceptibility Locus (dpeaa)DE-He213 Allelic Association (dpeaa)DE-He213 Obesity Gene (dpeaa)DE-He213 Arner, Peter aut Hoffstedt, Johan aut Brodin, David aut Dubern, Beatrice aut Czernichow, Sébastien aut van't Hooft, Ferdinand aut Axelsson, Tomas aut Pedersen, Oluf aut Hansen, Torben aut Sørensen, Thorkild IA aut Hebebrand, Johannes aut Kere, Juha aut Dahlman-Wright, Karin aut Hamsten, Anders aut Clement, Karine aut Dahlman, Ingrid aut Enthalten in BMC medical genomics London : BioMed Central, 2008 4(2011), 1 vom: 28. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:4 year:2011 number:1 day:28 month:06 https://dx.doi.org/10.1186/1755-8794-4-51 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 4 2011 1 28 06 |
allfieldsGer |
10.1186/1755-8794-4-51 doi (DE-627)SPR028467019 (SPR)1755-8794-4-51-e DE-627 ger DE-627 rakwb eng Jiao, Hong verfasserin aut Genome wide association study identifies KCNMA1contributing to human obesity 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jiao et al; licensee BioMed Central Ltd. 2011 Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. Obesity (dpeaa)DE-He213 Morbid Obesity (dpeaa)DE-He213 Susceptibility Locus (dpeaa)DE-He213 Allelic Association (dpeaa)DE-He213 Obesity Gene (dpeaa)DE-He213 Arner, Peter aut Hoffstedt, Johan aut Brodin, David aut Dubern, Beatrice aut Czernichow, Sébastien aut van't Hooft, Ferdinand aut Axelsson, Tomas aut Pedersen, Oluf aut Hansen, Torben aut Sørensen, Thorkild IA aut Hebebrand, Johannes aut Kere, Juha aut Dahlman-Wright, Karin aut Hamsten, Anders aut Clement, Karine aut Dahlman, Ingrid aut Enthalten in BMC medical genomics London : BioMed Central, 2008 4(2011), 1 vom: 28. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:4 year:2011 number:1 day:28 month:06 https://dx.doi.org/10.1186/1755-8794-4-51 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 4 2011 1 28 06 |
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10.1186/1755-8794-4-51 doi (DE-627)SPR028467019 (SPR)1755-8794-4-51-e DE-627 ger DE-627 rakwb eng Jiao, Hong verfasserin aut Genome wide association study identifies KCNMA1contributing to human obesity 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jiao et al; licensee BioMed Central Ltd. 2011 Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. Obesity (dpeaa)DE-He213 Morbid Obesity (dpeaa)DE-He213 Susceptibility Locus (dpeaa)DE-He213 Allelic Association (dpeaa)DE-He213 Obesity Gene (dpeaa)DE-He213 Arner, Peter aut Hoffstedt, Johan aut Brodin, David aut Dubern, Beatrice aut Czernichow, Sébastien aut van't Hooft, Ferdinand aut Axelsson, Tomas aut Pedersen, Oluf aut Hansen, Torben aut Sørensen, Thorkild IA aut Hebebrand, Johannes aut Kere, Juha aut Dahlman-Wright, Karin aut Hamsten, Anders aut Clement, Karine aut Dahlman, Ingrid aut Enthalten in BMC medical genomics London : BioMed Central, 2008 4(2011), 1 vom: 28. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:4 year:2011 number:1 day:28 month:06 https://dx.doi.org/10.1186/1755-8794-4-51 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 4 2011 1 28 06 |
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Genome wide association study identifies KCNMA1contributing to human obesity |
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Genome wide association study identifies KCNMA1contributing to human obesity |
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Jiao, Hong |
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BMC medical genomics |
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Jiao, Hong Arner, Peter Hoffstedt, Johan Brodin, David Dubern, Beatrice Czernichow, Sébastien van't Hooft, Ferdinand Axelsson, Tomas Pedersen, Oluf Hansen, Torben Sørensen, Thorkild IA Hebebrand, Johannes Kere, Juha Dahlman-Wright, Karin Hamsten, Anders Clement, Karine Dahlman, Ingrid |
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Jiao, Hong |
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10.1186/1755-8794-4-51 |
title_sort |
genome wide association study identifies kcnma1contributing to human obesity |
title_auth |
Genome wide association study identifies KCNMA1contributing to human obesity |
abstract |
Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. © Jiao et al; licensee BioMed Central Ltd. 2011 |
abstractGer |
Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. © Jiao et al; licensee BioMed Central Ltd. 2011 |
abstract_unstemmed |
Background Recent genome-wide association (GWA) analyses have identified common single nucleotide polymorphisms (SNPs) that are associated with obesity. However, the reported genetic variation in obesity explains only a minor fraction of the total genetic variation expected to be present in the population. Thus many genetic variants controlling obesity remain to be identified. The aim of this study was to use GWA followed by multiple stepwise validations to identify additional genes associated with obesity. Methods We performed a GWA analysis in 164 morbidly obese subjects (BMI:body mass index > 40 kg/$ m^{2} $) and 163 Swedish subjects (> 45 years) who had always been lean. The 700 SNPs displaying the strongest association with obesity in the GWA were analyzed in a second cohort comprising 460 morbidly obese subjects and 247 consistently lean Swedish adults. 23 SNPs remained significantly associated with obesity (nominal P< 0.05) and were in a step-wise manner followed up in five additional cohorts from Sweden, France, and Germany together comprising 4214 obese and 5417 lean or population-based control individuals. Three samples, n = 4133, were used to investigate the population-based associations with BMI. Gene expression in abdominal subcutaneous adipose tissue in relation to obesity was investigated for14 adults. Results Potassium channel, calcium activated, large conductance, subfamily M, alpha member (KCNMA1) rs2116830*G and BDNF rs988712*G were associated with obesity in five of six investigated case-control cohorts. In meta-analysis of 4838 obese and 5827 control subjects we obtained genome-wide significant allelic association with obesity for KCNMA1 rs2116830*G with P = 2.82 × $ 10^{-10} $ and an odds ratio (OR) based on cases vs controls of 1.26 [95% C.I. 1.12-1.41] and for BDNF rs988712*G with P = 5.2 × $ 10^{-17} $and an OR of 1.36 [95% C.I. 1.20-1.55]. KCNMA1 rs2116830*G was not associated with BMI in the population-based samples. Adipose tissue (P = 0.0001) and fat cell (P = 0.04) expression of KCNMA1 was increased in obesity. Conclusions We have identified KCNMA1 as a new susceptibility locus for obesity, and confirmed the association of the BDNF locus at the genome-wide significant level. © Jiao et al; licensee BioMed Central Ltd. 2011 |
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Arner, Peter Hoffstedt, Johan Brodin, David Dubern, Beatrice Czernichow, Sébastien van't Hooft, Ferdinand Axelsson, Tomas Pedersen, Oluf Hansen, Torben Sørensen, Thorkild IA Hebebrand, Johannes Kere, Juha Dahlman-Wright, Karin Hamsten, Anders Clement, Karine Dahlman, Ingrid |
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