Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways
Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated w...
Ausführliche Beschreibung
Autor*in: |
Mancini, Cecilia [verfasserIn] |
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Englisch |
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2013 |
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© Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
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Übergeordnetes Werk: |
Enthalten in: BMC medical genomics - London : BioMed Central, 2008, 6(2013), 1 vom: 18. Juni |
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Übergeordnetes Werk: |
volume:6 ; year:2013 ; number:1 ; day:18 ; month:06 |
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DOI / URN: |
10.1186/1755-8794-6-22 |
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SPR028468392 |
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520 | |a Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. | ||
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650 | 4 | |a Spinocerebellar ataxia |7 (dpeaa)DE-He213 | |
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700 | 1 | |a Maltecca, Francesca |4 aut | |
700 | 1 | |a Gazzano, Elena |4 aut | |
700 | 1 | |a Bartoletti Stella, Anna |4 aut | |
700 | 1 | |a Calvaruso, Maria Antonietta |4 aut | |
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700 | 1 | |a Funaro, Ada |4 aut | |
700 | 1 | |a Gasparre, Giuseppe |4 aut | |
700 | 1 | |a Gustincich, Stefano |4 aut | |
700 | 1 | |a Brusco, Alfredo |4 aut | |
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10.1186/1755-8794-6-22 doi (DE-627)SPR028468392 (SPR)1755-8794-6-22-e DE-627 ger DE-627 rakwb eng Mancini, Cecilia verfasserin aut Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 Roncaglia, Paola aut Brussino, Alessandro aut Stevanin, Giovanni aut Lo Buono, Nicola aut Krmac, Helena aut Maltecca, Francesca aut Gazzano, Elena aut Bartoletti Stella, Anna aut Calvaruso, Maria Antonietta aut Iommarini, Luisa aut Cagnoli, Claudia aut Forlani, Sylvie aut Le Ber, Isabelle aut Durr, Alexandra aut Brice, Alexis aut Ghigo, Dario aut Casari, Giorgio aut Porcelli, Anna Maria aut Funaro, Ada aut Gasparre, Giuseppe aut Gustincich, Stefano aut Brusco, Alfredo aut Enthalten in BMC medical genomics London : BioMed Central, 2008 6(2013), 1 vom: 18. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:6 year:2013 number:1 day:18 month:06 https://dx.doi.org/10.1186/1755-8794-6-22 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 18 06 |
spelling |
10.1186/1755-8794-6-22 doi (DE-627)SPR028468392 (SPR)1755-8794-6-22-e DE-627 ger DE-627 rakwb eng Mancini, Cecilia verfasserin aut Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 Roncaglia, Paola aut Brussino, Alessandro aut Stevanin, Giovanni aut Lo Buono, Nicola aut Krmac, Helena aut Maltecca, Francesca aut Gazzano, Elena aut Bartoletti Stella, Anna aut Calvaruso, Maria Antonietta aut Iommarini, Luisa aut Cagnoli, Claudia aut Forlani, Sylvie aut Le Ber, Isabelle aut Durr, Alexandra aut Brice, Alexis aut Ghigo, Dario aut Casari, Giorgio aut Porcelli, Anna Maria aut Funaro, Ada aut Gasparre, Giuseppe aut Gustincich, Stefano aut Brusco, Alfredo aut Enthalten in BMC medical genomics London : BioMed Central, 2008 6(2013), 1 vom: 18. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:6 year:2013 number:1 day:18 month:06 https://dx.doi.org/10.1186/1755-8794-6-22 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 18 06 |
allfields_unstemmed |
10.1186/1755-8794-6-22 doi (DE-627)SPR028468392 (SPR)1755-8794-6-22-e DE-627 ger DE-627 rakwb eng Mancini, Cecilia verfasserin aut Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 Roncaglia, Paola aut Brussino, Alessandro aut Stevanin, Giovanni aut Lo Buono, Nicola aut Krmac, Helena aut Maltecca, Francesca aut Gazzano, Elena aut Bartoletti Stella, Anna aut Calvaruso, Maria Antonietta aut Iommarini, Luisa aut Cagnoli, Claudia aut Forlani, Sylvie aut Le Ber, Isabelle aut Durr, Alexandra aut Brice, Alexis aut Ghigo, Dario aut Casari, Giorgio aut Porcelli, Anna Maria aut Funaro, Ada aut Gasparre, Giuseppe aut Gustincich, Stefano aut Brusco, Alfredo aut Enthalten in BMC medical genomics London : BioMed Central, 2008 6(2013), 1 vom: 18. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:6 year:2013 number:1 day:18 month:06 https://dx.doi.org/10.1186/1755-8794-6-22 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 18 06 |
allfieldsGer |
10.1186/1755-8794-6-22 doi (DE-627)SPR028468392 (SPR)1755-8794-6-22-e DE-627 ger DE-627 rakwb eng Mancini, Cecilia verfasserin aut Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 Roncaglia, Paola aut Brussino, Alessandro aut Stevanin, Giovanni aut Lo Buono, Nicola aut Krmac, Helena aut Maltecca, Francesca aut Gazzano, Elena aut Bartoletti Stella, Anna aut Calvaruso, Maria Antonietta aut Iommarini, Luisa aut Cagnoli, Claudia aut Forlani, Sylvie aut Le Ber, Isabelle aut Durr, Alexandra aut Brice, Alexis aut Ghigo, Dario aut Casari, Giorgio aut Porcelli, Anna Maria aut Funaro, Ada aut Gasparre, Giuseppe aut Gustincich, Stefano aut Brusco, Alfredo aut Enthalten in BMC medical genomics London : BioMed Central, 2008 6(2013), 1 vom: 18. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:6 year:2013 number:1 day:18 month:06 https://dx.doi.org/10.1186/1755-8794-6-22 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 18 06 |
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10.1186/1755-8794-6-22 doi (DE-627)SPR028468392 (SPR)1755-8794-6-22-e DE-627 ger DE-627 rakwb eng Mancini, Cecilia verfasserin aut Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 Roncaglia, Paola aut Brussino, Alessandro aut Stevanin, Giovanni aut Lo Buono, Nicola aut Krmac, Helena aut Maltecca, Francesca aut Gazzano, Elena aut Bartoletti Stella, Anna aut Calvaruso, Maria Antonietta aut Iommarini, Luisa aut Cagnoli, Claudia aut Forlani, Sylvie aut Le Ber, Isabelle aut Durr, Alexandra aut Brice, Alexis aut Ghigo, Dario aut Casari, Giorgio aut Porcelli, Anna Maria aut Funaro, Ada aut Gasparre, Giuseppe aut Gustincich, Stefano aut Brusco, Alfredo aut Enthalten in BMC medical genomics London : BioMed Central, 2008 6(2013), 1 vom: 18. Juni (DE-627)559080824 (DE-600)2411865-5 1755-8794 nnns volume:6 year:2013 number:1 day:18 month:06 https://dx.doi.org/10.1186/1755-8794-6-22 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 18 06 |
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Mancini, Cecilia @@aut@@ Roncaglia, Paola @@aut@@ Brussino, Alessandro @@aut@@ Stevanin, Giovanni @@aut@@ Lo Buono, Nicola @@aut@@ Krmac, Helena @@aut@@ Maltecca, Francesca @@aut@@ Gazzano, Elena @@aut@@ Bartoletti Stella, Anna @@aut@@ Calvaruso, Maria Antonietta @@aut@@ Iommarini, Luisa @@aut@@ Cagnoli, Claudia @@aut@@ Forlani, Sylvie @@aut@@ Le Ber, Isabelle @@aut@@ Durr, Alexandra @@aut@@ Brice, Alexis @@aut@@ Ghigo, Dario @@aut@@ Casari, Giorgio @@aut@@ Porcelli, Anna Maria @@aut@@ Funaro, Ada @@aut@@ Gasparre, Giuseppe @@aut@@ Gustincich, Stefano @@aut@@ Brusco, Alfredo @@aut@@ |
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Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways Autosomal dominant cerebellar ataxia (dpeaa)DE-He213 Spinocerebellar ataxia (dpeaa)DE-He213 SCA28 (dpeaa)DE-He213 AFG3L2 (dpeaa)DE-He213 Genome-wide expression (dpeaa)DE-He213 LCLs (dpeaa)DE-He213 |
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Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways |
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Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways |
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Mancini, Cecilia |
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Mancini, Cecilia Roncaglia, Paola Brussino, Alessandro Stevanin, Giovanni Lo Buono, Nicola Krmac, Helena Maltecca, Francesca Gazzano, Elena Bartoletti Stella, Anna Calvaruso, Maria Antonietta Iommarini, Luisa Cagnoli, Claudia Forlani, Sylvie Le Ber, Isabelle Durr, Alexandra Brice, Alexis Ghigo, Dario Casari, Giorgio Porcelli, Anna Maria Funaro, Ada Gasparre, Giuseppe Gustincich, Stefano Brusco, Alfredo |
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genome-wide expression profiling and functional characterization of sca28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways |
title_auth |
Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways |
abstract |
Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
abstractGer |
Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
abstract_unstemmed |
Background SCA28 is an autosomal dominant ataxia associated with AFG3L2 gene mutations. We performed a whole genome expression profiling using lymphoblastoid cell lines (LCLs) from four SCA28 patients and six unrelated healthy controls matched for sex and age. Methods Gene expression was evaluated with the Affymetrix GeneChip Human Genome U133A 2.0 Arrays and data were validated by real-time PCR. Results We found 66 genes whose expression was statistically different in SCA28 LCLs, 35 of which were up-regulated and 31 down-regulated. The differentially expressed genes were clustered in five functional categories: (1) regulation of cell proliferation; (2) regulation of programmed cell death; (3) response to oxidative stress; (4) cell adhesion, and (5) chemical homeostasis. To validate these data, we performed functional experiments that proved an impaired SCA28 LCLs growth compared to controls (p < 0.005), an increased number of cells in the G0/G1 phase (p < 0.001), and an increased mortality because of apoptosis (p < 0.05). We also showed that respiratory chain activity and reactive oxygen species levels was not altered, although lipid peroxidation in SCA28 LCLs was increased in basal conditions (p < 0.05). We did not detect mitochondrial DNA large deletions. An increase of TFAM, a crucial protein for mtDNA maintenance, and of DRP1, a key regulator of mitochondrial dynamic mechanism, suggested an alteration of fission/fusion pathways. Conclusions Whole genome expression profiling, performed on SCA28 LCLs, allowed us to identify five altered functional categories that characterize the SCA28 LCLs phenotype, the first reported in human cells to our knowledge. © Mancini et al.; licensee BioMed Central Ltd. 2013. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( |
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Genome-wide expression profiling and functional characterization of SCA28 lymphoblastoid cell lines reveal impairment in cell growth and activation of apoptotic pathways |
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Roncaglia, Paola Brussino, Alessandro Stevanin, Giovanni Lo Buono, Nicola Krmac, Helena Maltecca, Francesca Gazzano, Elena Bartoletti Stella, Anna Calvaruso, Maria Antonietta Iommarini, Luisa Cagnoli, Claudia Forlani, Sylvie Le Ber, Isabelle Durr, Alexandra Brice, Alexis Ghigo, Dario Casari, Giorgio Porcelli, Anna Maria Funaro, Ada Gasparre, Giuseppe Gustincich, Stefano Brusco, Alfredo |
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