Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A

Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results Th...
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Autor*in:	Sillankorva, Sanna [verfasserIn] Kluskens, Leon D Lingohr, Erika J Kropinski, Andrew M Neubauer, Peter Azeredo, Joana

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2011

Schlagwörter:	Lysis Gene Nonessential Protein Direct Terminal Repeat Internal Virion Protein Display Sequence Similarity

Anmerkung:	© Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (

Übergeordnetes Werk:	Enthalten in: Virology journal - London : BioMed Central, 2004, 8(2011), 1 vom: 26. März
Übergeordnetes Werk:	volume:8 ; year:2011 ; number:1 ; day:26 ; month:03

Links:	Volltext

DOI / URN:	10.1186/1743-422X-8-142

Katalog-ID:	SPR029245036

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245	1	0	\|a Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
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520			\|a Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7.
650		4	\|a Lysis Gene \|7 (dpeaa)DE-He213
650		4	\|a Nonessential Protein \|7 (dpeaa)DE-He213
650		4	\|a Direct Terminal Repeat \|7 (dpeaa)DE-He213
650		4	\|a Internal Virion Protein \|7 (dpeaa)DE-He213
650		4	\|a Display Sequence Similarity \|7 (dpeaa)DE-He213
700	1		\|a Kluskens, Leon D \|4 aut
700	1		\|a Lingohr, Erika J \|4 aut
700	1		\|a Kropinski, Andrew M \|4 aut
700	1		\|a Neubauer, Peter \|4 aut
700	1		\|a Azeredo, Joana \|4 aut
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912			\|a GBV_USEFLAG_A
912			\|a SYSFLAG_A
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912			\|a GBV_ILN_11
912			\|a GBV_ILN_20
912			\|a GBV_ILN_22
912			\|a GBV_ILN_23
912			\|a GBV_ILN_24
912			\|a GBV_ILN_31
912			\|a GBV_ILN_39
912			\|a GBV_ILN_40
912			\|a GBV_ILN_60
912			\|a GBV_ILN_62
912			\|a GBV_ILN_63
912			\|a GBV_ILN_65
912			\|a GBV_ILN_69
912			\|a GBV_ILN_73
912			\|a GBV_ILN_74
912			\|a GBV_ILN_95
912			\|a GBV_ILN_105
912			\|a GBV_ILN_110
912			\|a GBV_ILN_151
912			\|a GBV_ILN_161
912			\|a GBV_ILN_170
912			\|a GBV_ILN_206
912			\|a GBV_ILN_213
912			\|a GBV_ILN_230
912			\|a GBV_ILN_285
912			\|a GBV_ILN_293
912			\|a GBV_ILN_602
912			\|a GBV_ILN_702
912			\|a GBV_ILN_2001
912			\|a GBV_ILN_2003
912			\|a GBV_ILN_2005
912			\|a GBV_ILN_2006
912			\|a GBV_ILN_2008
912			\|a GBV_ILN_2009
912			\|a GBV_ILN_2010
912			\|a GBV_ILN_2011
912			\|a GBV_ILN_2014
912			\|a GBV_ILN_2015
912			\|a GBV_ILN_2020
912			\|a GBV_ILN_2021
912			\|a GBV_ILN_2025
912			\|a GBV_ILN_2031
912			\|a GBV_ILN_2038
912			\|a GBV_ILN_2044
912			\|a GBV_ILN_2048
912			\|a GBV_ILN_2050
912			\|a GBV_ILN_2055
912			\|a GBV_ILN_2056
912			\|a GBV_ILN_2057
912			\|a GBV_ILN_2061
912			\|a GBV_ILN_2111
912			\|a GBV_ILN_2113
912			\|a GBV_ILN_2190
912			\|a GBV_ILN_4012
912			\|a GBV_ILN_4037
912			\|a GBV_ILN_4112
912			\|a GBV_ILN_4125
912			\|a GBV_ILN_4126
912			\|a GBV_ILN_4249
912			\|a GBV_ILN_4305
912			\|a GBV_ILN_4306
912			\|a GBV_ILN_4307
912			\|a GBV_ILN_4313
912			\|a GBV_ILN_4322
912			\|a GBV_ILN_4323
912			\|a GBV_ILN_4324
912			\|a GBV_ILN_4325
912			\|a GBV_ILN_4338
912			\|a GBV_ILN_4367
912			\|a GBV_ILN_4700
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Indexfelder

author_variant	s s ss l d k ld ldk e j l ej ejl a m k am amk p n pn j a ja
matchkey_str	article:1743422X:2011----::opeeeoeeunefhltcsuooafur
hierarchy_sort_str	2011
publishDate	2011
allfields	10.1186/1743-422X-8-142 doi (DE-627)SPR029245036 (SPR)1743-422X-8-142-e DE-627 ger DE-627 rakwb eng Sillankorva, Sanna verfasserin aut Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213 Kluskens, Leon D aut Lingohr, Erika J aut Kropinski, Andrew M aut Neubauer, Peter aut Azeredo, Joana aut Enthalten in Virology journal London : BioMed Central, 2004 8(2011), 1 vom: 26. März (DE-627)394165004 (DE-600)2160640-7 1743-422X nnns volume:8 year:2011 number:1 day:26 month:03 https://dx.doi.org/10.1186/1743-422X-8-142 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2011 1 26 03
spelling	10.1186/1743-422X-8-142 doi (DE-627)SPR029245036 (SPR)1743-422X-8-142-e DE-627 ger DE-627 rakwb eng Sillankorva, Sanna verfasserin aut Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213 Kluskens, Leon D aut Lingohr, Erika J aut Kropinski, Andrew M aut Neubauer, Peter aut Azeredo, Joana aut Enthalten in Virology journal London : BioMed Central, 2004 8(2011), 1 vom: 26. März (DE-627)394165004 (DE-600)2160640-7 1743-422X nnns volume:8 year:2011 number:1 day:26 month:03 https://dx.doi.org/10.1186/1743-422X-8-142 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2011 1 26 03
allfields_unstemmed	10.1186/1743-422X-8-142 doi (DE-627)SPR029245036 (SPR)1743-422X-8-142-e DE-627 ger DE-627 rakwb eng Sillankorva, Sanna verfasserin aut Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213 Kluskens, Leon D aut Lingohr, Erika J aut Kropinski, Andrew M aut Neubauer, Peter aut Azeredo, Joana aut Enthalten in Virology journal London : BioMed Central, 2004 8(2011), 1 vom: 26. März (DE-627)394165004 (DE-600)2160640-7 1743-422X nnns volume:8 year:2011 number:1 day:26 month:03 https://dx.doi.org/10.1186/1743-422X-8-142 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2011 1 26 03
allfieldsGer	10.1186/1743-422X-8-142 doi (DE-627)SPR029245036 (SPR)1743-422X-8-142-e DE-627 ger DE-627 rakwb eng Sillankorva, Sanna verfasserin aut Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213 Kluskens, Leon D aut Lingohr, Erika J aut Kropinski, Andrew M aut Neubauer, Peter aut Azeredo, Joana aut Enthalten in Virology journal London : BioMed Central, 2004 8(2011), 1 vom: 26. März (DE-627)394165004 (DE-600)2160640-7 1743-422X nnns volume:8 year:2011 number:1 day:26 month:03 https://dx.doi.org/10.1186/1743-422X-8-142 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2011 1 26 03
allfieldsSound	10.1186/1743-422X-8-142 doi (DE-627)SPR029245036 (SPR)1743-422X-8-142-e DE-627 ger DE-627 rakwb eng Sillankorva, Sanna verfasserin aut Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A 2011 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213 Kluskens, Leon D aut Lingohr, Erika J aut Kropinski, Andrew M aut Neubauer, Peter aut Azeredo, Joana aut Enthalten in Virology journal London : BioMed Central, 2004 8(2011), 1 vom: 26. März (DE-627)394165004 (DE-600)2160640-7 1743-422X nnns volume:8 year:2011 number:1 day:26 month:03 https://dx.doi.org/10.1186/1743-422X-8-142 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2031 GBV_ILN_2038 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2061 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2190 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 8 2011 1 26 03
language	English
source	Enthalten in Virology journal 8(2011), 1 vom: 26. März volume:8 year:2011 number:1 day:26 month:03
sourceStr	Enthalten in Virology journal 8(2011), 1 vom: 26. März volume:8 year:2011 number:1 day:26 month:03
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Lysis Gene Nonessential Protein Direct Terminal Repeat Internal Virion Protein Display Sequence Similarity
isfreeaccess_bool	false
container_title	Virology journal
authorswithroles_txt_mv	Sillankorva, Sanna @@aut@@ Kluskens, Leon D @@aut@@ Lingohr, Erika J @@aut@@ Kropinski, Andrew M @@aut@@ Neubauer, Peter @@aut@@ Azeredo, Joana @@aut@@
publishDateDaySort_date	2011-03-26T00:00:00Z
hierarchy_top_id	394165004
id	SPR029245036
language_de	englisch
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author	Sillankorva, Sanna
spellingShingle	Sillankorva, Sanna misc Lysis Gene misc Nonessential Protein misc Direct Terminal Repeat misc Internal Virion Protein misc Display Sequence Similarity Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
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topic_title	Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A Lysis Gene (dpeaa)DE-He213 Nonessential Protein (dpeaa)DE-He213 Direct Terminal Repeat (dpeaa)DE-He213 Internal Virion Protein (dpeaa)DE-He213 Display Sequence Similarity (dpeaa)DE-He213
topic	misc Lysis Gene misc Nonessential Protein misc Direct Terminal Repeat misc Internal Virion Protein misc Display Sequence Similarity
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title	Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
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title_full	Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
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author_browse	Sillankorva, Sanna Kluskens, Leon D Lingohr, Erika J Kropinski, Andrew M Neubauer, Peter Azeredo, Joana
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title_sort	complete genome sequence of the lytic pseudomonas fluorescens phage ϕibb-pf7a
title_auth	Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
abstract	Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (
abstractGer	Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (
abstract_unstemmed	Background Phage ϕIBB-PF7A is a T7-like bacteriophage capable of infecting several Pseudomonas fluorescens dairy isolates and is extremely efficient in lysing this bacterium even when growing in biofilms attached to surfaces. This work describes the complete genome sequence of this phage. Results The genome consists of a linear double-stranded DNA of 40,973 bp, with 985 bp long direct terminal repeats and a GC content of approximately 56%. There are 52 open reading frames which occupy 94.6% of the genome ranging from 137 to 3995 nucleotides. Twenty eight (46.7%) of the proteins encoded by this virus exhibit sequence similarity to coliphage T7 proteins while 34 (81.0%) are similar to proteins of Pseudomonas phage gh-1. Conclusions That this phage is closely related to Pseudomonas putida phage gh-1 and coliphage T7 places it in the "T7-like viruses" genus of the subfamily Autographivirinae within the family Podoviridae. Compared to the genome of gh-1, the sequence of ϕIBB-PF7A is longer and contains more genes with unassigned function and lacks a few potentially essential and non-essential T7 genes, such as gene1.1, 3.8, and 7. © Sillankorva et al; licensee BioMed Central Ltd. 2011. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (
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title_short	Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A
url	https://dx.doi.org/10.1186/1743-422X-8-142
remote_bool	true
author2	Kluskens, Leon D Lingohr, Erika J Kropinski, Andrew M Neubauer, Peter Azeredo, Joana
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up_date	2024-07-04T00:08:28.999Z
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Complete genome sequence of the lytic Pseudomonas fluorescens phage ϕIBB-PF7A

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