GrainScan: a low cost, fast method for grain size and colour measurements

Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grai...
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Autor*in:	Whan, Alex P [verfasserIn] Smith, Alison B Cavanagh, Colin R Ral, Jean-Philippe F Shaw, Lindsay M Howitt, Crispin A Bischof, Leanne

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2014

Schlagwörter:	Wheat Brachypodium distachyon Seed size Seed colour Image analysis

Anmerkung:	© Whan et al.; licensee BioMed Central Ltd. 2014

Übergeordnetes Werk:	Enthalten in: Plant methods - London : BioMed Central, 2005, 10(2014), 1 vom: 08. Juli
Übergeordnetes Werk:	volume:10 ; year:2014 ; number:1 ; day:08 ; month:07

Links:	Volltext

DOI / URN:	10.1186/1746-4811-10-23

Katalog-ID:	SPR029406641

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520			\|a Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available.
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allfields	10.1186/1746-4811-10-23 doi (DE-627)SPR029406641 (SPR)1746-4811-10-23-e DE-627 ger DE-627 rakwb eng Whan, Alex P verfasserin aut GrainScan: a low cost, fast method for grain size and colour measurements 2014 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Whan et al.; licensee BioMed Central Ltd. 2014 Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213 Smith, Alison B aut Cavanagh, Colin R aut Ral, Jean-Philippe F aut Shaw, Lindsay M aut Howitt, Crispin A aut Bischof, Leanne aut Enthalten in Plant methods London : BioMed Central, 2005 10(2014), 1 vom: 08. Juli (DE-627)500321191 (DE-600)2203723-8 1746-4811 nnns volume:10 year:2014 number:1 day:08 month:07 https://dx.doi.org/10.1186/1746-4811-10-23 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2014 1 08 07
spelling	10.1186/1746-4811-10-23 doi (DE-627)SPR029406641 (SPR)1746-4811-10-23-e DE-627 ger DE-627 rakwb eng Whan, Alex P verfasserin aut GrainScan: a low cost, fast method for grain size and colour measurements 2014 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Whan et al.; licensee BioMed Central Ltd. 2014 Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213 Smith, Alison B aut Cavanagh, Colin R aut Ral, Jean-Philippe F aut Shaw, Lindsay M aut Howitt, Crispin A aut Bischof, Leanne aut Enthalten in Plant methods London : BioMed Central, 2005 10(2014), 1 vom: 08. Juli (DE-627)500321191 (DE-600)2203723-8 1746-4811 nnns volume:10 year:2014 number:1 day:08 month:07 https://dx.doi.org/10.1186/1746-4811-10-23 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2014 1 08 07
allfields_unstemmed	10.1186/1746-4811-10-23 doi (DE-627)SPR029406641 (SPR)1746-4811-10-23-e DE-627 ger DE-627 rakwb eng Whan, Alex P verfasserin aut GrainScan: a low cost, fast method for grain size and colour measurements 2014 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Whan et al.; licensee BioMed Central Ltd. 2014 Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213 Smith, Alison B aut Cavanagh, Colin R aut Ral, Jean-Philippe F aut Shaw, Lindsay M aut Howitt, Crispin A aut Bischof, Leanne aut Enthalten in Plant methods London : BioMed Central, 2005 10(2014), 1 vom: 08. Juli (DE-627)500321191 (DE-600)2203723-8 1746-4811 nnns volume:10 year:2014 number:1 day:08 month:07 https://dx.doi.org/10.1186/1746-4811-10-23 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2014 1 08 07
allfieldsGer	10.1186/1746-4811-10-23 doi (DE-627)SPR029406641 (SPR)1746-4811-10-23-e DE-627 ger DE-627 rakwb eng Whan, Alex P verfasserin aut GrainScan: a low cost, fast method for grain size and colour measurements 2014 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Whan et al.; licensee BioMed Central Ltd. 2014 Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213 Smith, Alison B aut Cavanagh, Colin R aut Ral, Jean-Philippe F aut Shaw, Lindsay M aut Howitt, Crispin A aut Bischof, Leanne aut Enthalten in Plant methods London : BioMed Central, 2005 10(2014), 1 vom: 08. Juli (DE-627)500321191 (DE-600)2203723-8 1746-4811 nnns volume:10 year:2014 number:1 day:08 month:07 https://dx.doi.org/10.1186/1746-4811-10-23 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2014 1 08 07
allfieldsSound	10.1186/1746-4811-10-23 doi (DE-627)SPR029406641 (SPR)1746-4811-10-23-e DE-627 ger DE-627 rakwb eng Whan, Alex P verfasserin aut GrainScan: a low cost, fast method for grain size and colour measurements 2014 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Whan et al.; licensee BioMed Central Ltd. 2014 Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213 Smith, Alison B aut Cavanagh, Colin R aut Ral, Jean-Philippe F aut Shaw, Lindsay M aut Howitt, Crispin A aut Bischof, Leanne aut Enthalten in Plant methods London : BioMed Central, 2005 10(2014), 1 vom: 08. Juli (DE-627)500321191 (DE-600)2203723-8 1746-4811 nnns volume:10 year:2014 number:1 day:08 month:07 https://dx.doi.org/10.1186/1746-4811-10-23 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 10 2014 1 08 07
language	English
source	Enthalten in Plant methods 10(2014), 1 vom: 08. Juli volume:10 year:2014 number:1 day:08 month:07
sourceStr	Enthalten in Plant methods 10(2014), 1 vom: 08. Juli volume:10 year:2014 number:1 day:08 month:07
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Wheat Brachypodium distachyon Seed size Seed colour Image analysis
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container_title	Plant methods
authorswithroles_txt_mv	Whan, Alex P @@aut@@ Smith, Alison B @@aut@@ Cavanagh, Colin R @@aut@@ Ral, Jean-Philippe F @@aut@@ Shaw, Lindsay M @@aut@@ Howitt, Crispin A @@aut@@ Bischof, Leanne @@aut@@
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author	Whan, Alex P
spellingShingle	Whan, Alex P misc Wheat misc Brachypodium distachyon misc Seed size misc Seed colour misc Image analysis GrainScan: a low cost, fast method for grain size and colour measurements
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topic_title	GrainScan: a low cost, fast method for grain size and colour measurements Wheat (dpeaa)DE-He213 Brachypodium distachyon (dpeaa)DE-He213 Seed size (dpeaa)DE-He213 Seed colour (dpeaa)DE-He213 Image analysis (dpeaa)DE-He213
topic	misc Wheat misc Brachypodium distachyon misc Seed size misc Seed colour misc Image analysis
topic_unstemmed	misc Wheat misc Brachypodium distachyon misc Seed size misc Seed colour misc Image analysis
topic_browse	misc Wheat misc Brachypodium distachyon misc Seed size misc Seed colour misc Image analysis
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title	GrainScan: a low cost, fast method for grain size and colour measurements
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title_full	GrainScan: a low cost, fast method for grain size and colour measurements
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author_browse	Whan, Alex P Smith, Alison B Cavanagh, Colin R Ral, Jean-Philippe F Shaw, Lindsay M Howitt, Crispin A Bischof, Leanne
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title_sort	grainscan: a low cost, fast method for grain size and colour measurements
title_auth	GrainScan: a low cost, fast method for grain size and colour measurements
abstract	Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. © Whan et al.; licensee BioMed Central Ltd. 2014
abstractGer	Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. © Whan et al.; licensee BioMed Central Ltd. 2014
abstract_unstemmed	Background Measuring grain characteristics is an integral component of cereal breeding and research into genetic control of seed development. Measures such as thousand grain weight are fast, but do not give an indication of variation within a sample. Other methods exist for detailed analysis of grain size, but are generally costly and very low throughput. Grain colour analysis is generally difficult to perform with accuracy, and existing methods are expensive and involved. Results We have developed a software method to measure grain size and colour from images captured with consumer level flatbed scanners, in a robust, standardised way. The accuracy and precision of the method have been demonstrated through screening wheat and Brachypodium distachyon populations for variation in size and colour. Conclusion By using GrainScan, cheap and fast measurement of grain colour and size will enable plant research programs to gain deeper understanding of material, where limited or no information is currently available. © Whan et al.; licensee BioMed Central Ltd. 2014
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container_issue	1
title_short	GrainScan: a low cost, fast method for grain size and colour measurements
url	https://dx.doi.org/10.1186/1746-4811-10-23
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author2	Smith, Alison B Cavanagh, Colin R Ral, Jean-Philippe F Shaw, Lindsay M Howitt, Crispin A Bischof, Leanne
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up_date	2024-07-04T00:50:10.146Z
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GrainScan: a low cost, fast method for grain size and colour measurements

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