Anni 2.0: a multipurpose text-mining tool for the life sciences

Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, dru...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Jelier, Rob [verfasserIn] Schuemie, Martijn J Veldhoven, Antoine Dorssers, Lambert CJ Jenster, Guido Kors, Jan A

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2008

Schlagwörter:	Thalidomide Additional Data File Visceral Leishmaniasis Leishmaniasis Semantic Type

Anmerkung:	© Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (

Übergeordnetes Werk:	Enthalten in: Genome biology - London : BioMed Central, 2000, 9(2008), 6 vom: 12. Juni
Übergeordnetes Werk:	volume:9 ; year:2008 ; number:6 ; day:12 ; month:06

Links:	Volltext

DOI / URN:	10.1186/gb-2008-9-6-r96

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spelling	10.1186/gb-2008-9-6-r96 doi (DE-627)SPR030003393 (SPR)gb-2008-9-6-r96-e DE-627 ger DE-627 rakwb eng Jelier, Rob verfasserin aut Anni 2.0: a multipurpose text-mining tool for the life sciences 2008 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License ( Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. Thalidomide (dpeaa)DE-He213 Additional Data File (dpeaa)DE-He213 Visceral Leishmaniasis (dpeaa)DE-He213 Leishmaniasis (dpeaa)DE-He213 Semantic Type (dpeaa)DE-He213 Schuemie, Martijn J aut Veldhoven, Antoine aut Dorssers, Lambert CJ aut Jenster, Guido aut Kors, Jan A aut Enthalten in Genome biology London : BioMed Central, 2000 9(2008), 6 vom: 12. Juni (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:9 year:2008 number:6 day:12 month:06 https://dx.doi.org/10.1186/gb-2008-9-6-r96 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2008 6 12 06
allfields_unstemmed	10.1186/gb-2008-9-6-r96 doi (DE-627)SPR030003393 (SPR)gb-2008-9-6-r96-e DE-627 ger DE-627 rakwb eng Jelier, Rob verfasserin aut Anni 2.0: a multipurpose text-mining tool for the life sciences 2008 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License ( Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. Thalidomide (dpeaa)DE-He213 Additional Data File (dpeaa)DE-He213 Visceral Leishmaniasis (dpeaa)DE-He213 Leishmaniasis (dpeaa)DE-He213 Semantic Type (dpeaa)DE-He213 Schuemie, Martijn J aut Veldhoven, Antoine aut Dorssers, Lambert CJ aut Jenster, Guido aut Kors, Jan A aut Enthalten in Genome biology London : BioMed Central, 2000 9(2008), 6 vom: 12. Juni (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:9 year:2008 number:6 day:12 month:06 https://dx.doi.org/10.1186/gb-2008-9-6-r96 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2008 6 12 06
allfieldsGer	10.1186/gb-2008-9-6-r96 doi (DE-627)SPR030003393 (SPR)gb-2008-9-6-r96-e DE-627 ger DE-627 rakwb eng Jelier, Rob verfasserin aut Anni 2.0: a multipurpose text-mining tool for the life sciences 2008 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License ( Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. Thalidomide (dpeaa)DE-He213 Additional Data File (dpeaa)DE-He213 Visceral Leishmaniasis (dpeaa)DE-He213 Leishmaniasis (dpeaa)DE-He213 Semantic Type (dpeaa)DE-He213 Schuemie, Martijn J aut Veldhoven, Antoine aut Dorssers, Lambert CJ aut Jenster, Guido aut Kors, Jan A aut Enthalten in Genome biology London : BioMed Central, 2000 9(2008), 6 vom: 12. Juni (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:9 year:2008 number:6 day:12 month:06 https://dx.doi.org/10.1186/gb-2008-9-6-r96 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2008 6 12 06
allfieldsSound	10.1186/gb-2008-9-6-r96 doi (DE-627)SPR030003393 (SPR)gb-2008-9-6-r96-e DE-627 ger DE-627 rakwb eng Jelier, Rob verfasserin aut Anni 2.0: a multipurpose text-mining tool for the life sciences 2008 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License ( Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. Thalidomide (dpeaa)DE-He213 Additional Data File (dpeaa)DE-He213 Visceral Leishmaniasis (dpeaa)DE-He213 Leishmaniasis (dpeaa)DE-He213 Semantic Type (dpeaa)DE-He213 Schuemie, Martijn J aut Veldhoven, Antoine aut Dorssers, Lambert CJ aut Jenster, Guido aut Kors, Jan A aut Enthalten in Genome biology London : BioMed Central, 2000 9(2008), 6 vom: 12. Juni (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:9 year:2008 number:6 day:12 month:06 https://dx.doi.org/10.1186/gb-2008-9-6-r96 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 9 2008 6 12 06
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source	Enthalten in Genome biology 9(2008), 6 vom: 12. Juni volume:9 year:2008 number:6 day:12 month:06
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author	Jelier, Rob
spellingShingle	Jelier, Rob misc Thalidomide misc Additional Data File misc Visceral Leishmaniasis misc Leishmaniasis misc Semantic Type Anni 2.0: a multipurpose text-mining tool for the life sciences
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topic_title	Anni 2.0: a multipurpose text-mining tool for the life sciences Thalidomide (dpeaa)DE-He213 Additional Data File (dpeaa)DE-He213 Visceral Leishmaniasis (dpeaa)DE-He213 Leishmaniasis (dpeaa)DE-He213 Semantic Type (dpeaa)DE-He213
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title_auth	Anni 2.0: a multipurpose text-mining tool for the life sciences
abstract	Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (
abstractGer	Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (
abstract_unstemmed	Abstract Anni 2.0 is an online tool (http://biosemantics.org/anni/) to aid the biomedical researcher with a broad range of information needs. Anni provides an ontology-based interface to MEDLINE and retrieves documents and associations for several classes of biomedical concepts, including genes, drugs and diseases, with established text-mining technology. In this article we illustrate Anni's usability by applying the tool to two use cases: interpretation of a set of differentially expressed genes, and literature-based knowledge discovery. © Jelier et al.; licensee BioMed Central Ltd. 2008. This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (
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title_short	Anni 2.0: a multipurpose text-mining tool for the life sciences
url	https://dx.doi.org/10.1186/gb-2008-9-6-r96
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author2	Schuemie, Martijn J Veldhoven, Antoine Dorssers, Lambert CJ Jenster, Guido Kors, Jan A
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