Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltr...
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Autor*in:	Levasseur, Anthony [verfasserIn] Drula, Elodie Lombard, Vincent Coutinho, Pedro M Henrissat, Bernard

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2013

Schlagwörter:	CAZy database Evolution of lignocellulose breakdown Ligninolytic enzymes Lytic polysaccharide monooxygenases

Anmerkung:	© Levasseur et al.; licensee BioMed Central Ltd. 2013

Übergeordnetes Werk:	Enthalten in: Biotechnology for biofuels - London : BioMed Central, 2008, 6(2013), 1 vom: 21. März
Übergeordnetes Werk:	volume:6 ; year:2013 ; number:1 ; day:21 ; month:03

Links:	Volltext

DOI / URN:	10.1186/1754-6834-6-41

Katalog-ID:	SPR030142253

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520			\|a Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery.
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allfields	10.1186/1754-6834-6-41 doi (DE-627)SPR030142253 (SPR)1754-6834-6-41-e DE-627 ger DE-627 rakwb eng Levasseur, Anthony verfasserin aut Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Levasseur et al.; licensee BioMed Central Ltd. 2013 Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213 Drula, Elodie aut Lombard, Vincent aut Coutinho, Pedro M aut Henrissat, Bernard aut Enthalten in Biotechnology for biofuels London : BioMed Central, 2008 6(2013), 1 vom: 21. März (DE-627)563167882 (DE-600)2421351-2 1754-6834 nnns volume:6 year:2013 number:1 day:21 month:03 https://dx.doi.org/10.1186/1754-6834-6-41 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2027 GBV_ILN_2055 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2119 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 21 03
spelling	10.1186/1754-6834-6-41 doi (DE-627)SPR030142253 (SPR)1754-6834-6-41-e DE-627 ger DE-627 rakwb eng Levasseur, Anthony verfasserin aut Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Levasseur et al.; licensee BioMed Central Ltd. 2013 Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213 Drula, Elodie aut Lombard, Vincent aut Coutinho, Pedro M aut Henrissat, Bernard aut Enthalten in Biotechnology for biofuels London : BioMed Central, 2008 6(2013), 1 vom: 21. März (DE-627)563167882 (DE-600)2421351-2 1754-6834 nnns volume:6 year:2013 number:1 day:21 month:03 https://dx.doi.org/10.1186/1754-6834-6-41 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2027 GBV_ILN_2055 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2119 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 21 03
allfields_unstemmed	10.1186/1754-6834-6-41 doi (DE-627)SPR030142253 (SPR)1754-6834-6-41-e DE-627 ger DE-627 rakwb eng Levasseur, Anthony verfasserin aut Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Levasseur et al.; licensee BioMed Central Ltd. 2013 Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213 Drula, Elodie aut Lombard, Vincent aut Coutinho, Pedro M aut Henrissat, Bernard aut Enthalten in Biotechnology for biofuels London : BioMed Central, 2008 6(2013), 1 vom: 21. März (DE-627)563167882 (DE-600)2421351-2 1754-6834 nnns volume:6 year:2013 number:1 day:21 month:03 https://dx.doi.org/10.1186/1754-6834-6-41 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2027 GBV_ILN_2055 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2119 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 21 03
allfieldsGer	10.1186/1754-6834-6-41 doi (DE-627)SPR030142253 (SPR)1754-6834-6-41-e DE-627 ger DE-627 rakwb eng Levasseur, Anthony verfasserin aut Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Levasseur et al.; licensee BioMed Central Ltd. 2013 Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213 Drula, Elodie aut Lombard, Vincent aut Coutinho, Pedro M aut Henrissat, Bernard aut Enthalten in Biotechnology for biofuels London : BioMed Central, 2008 6(2013), 1 vom: 21. März (DE-627)563167882 (DE-600)2421351-2 1754-6834 nnns volume:6 year:2013 number:1 day:21 month:03 https://dx.doi.org/10.1186/1754-6834-6-41 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2027 GBV_ILN_2055 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2119 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 21 03
allfieldsSound	10.1186/1754-6834-6-41 doi (DE-627)SPR030142253 (SPR)1754-6834-6-41-e DE-627 ger DE-627 rakwb eng Levasseur, Anthony verfasserin aut Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Levasseur et al.; licensee BioMed Central Ltd. 2013 Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213 Drula, Elodie aut Lombard, Vincent aut Coutinho, Pedro M aut Henrissat, Bernard aut Enthalten in Biotechnology for biofuels London : BioMed Central, 2008 6(2013), 1 vom: 21. März (DE-627)563167882 (DE-600)2421351-2 1754-6834 nnns volume:6 year:2013 number:1 day:21 month:03 https://dx.doi.org/10.1186/1754-6834-6-41 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2027 GBV_ILN_2055 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2119 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4335 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 6 2013 1 21 03
language	English
source	Enthalten in Biotechnology for biofuels 6(2013), 1 vom: 21. März volume:6 year:2013 number:1 day:21 month:03
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topic_facet	CAZy database Evolution of lignocellulose breakdown Ligninolytic enzymes Lytic polysaccharide monooxygenases
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authorswithroles_txt_mv	Levasseur, Anthony @@aut@@ Drula, Elodie @@aut@@ Lombard, Vincent @@aut@@ Coutinho, Pedro M @@aut@@ Henrissat, Bernard @@aut@@
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author	Levasseur, Anthony
spellingShingle	Levasseur, Anthony misc CAZy database misc Evolution of lignocellulose breakdown misc Ligninolytic enzymes misc Lytic polysaccharide monooxygenases Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
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topic_title	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes CAZy database (dpeaa)DE-He213 Evolution of lignocellulose breakdown (dpeaa)DE-He213 Ligninolytic enzymes (dpeaa)DE-He213 Lytic polysaccharide monooxygenases (dpeaa)DE-He213
topic	misc CAZy database misc Evolution of lignocellulose breakdown misc Ligninolytic enzymes misc Lytic polysaccharide monooxygenases
topic_unstemmed	misc CAZy database misc Evolution of lignocellulose breakdown misc Ligninolytic enzymes misc Lytic polysaccharide monooxygenases
topic_browse	misc CAZy database misc Evolution of lignocellulose breakdown misc Ligninolytic enzymes misc Lytic polysaccharide monooxygenases
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title	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
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title_full	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
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author_browse	Levasseur, Anthony Drula, Elodie Lombard, Vincent Coutinho, Pedro M Henrissat, Bernard
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author-letter	Levasseur, Anthony
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title_sort	expansion of the enzymatic repertoire of the cazy database to integrate auxiliary redox enzymes
title_auth	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
abstract	Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. © Levasseur et al.; licensee BioMed Central Ltd. 2013
abstractGer	Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. © Levasseur et al.; licensee BioMed Central Ltd. 2013
abstract_unstemmed	Background Since its inception, the carbohydrate-active enzymes database (CAZy; http://www.cazy.org) has described the families of enzymes that cleave or build complex carbohydrates, namely the glycoside hydrolases (GH), the polysaccharide lyases (PL), the carbohydrate esterases (CE), the glycosyltransferases (GT) and their appended non-catalytic carbohydrate-binding modules (CBM). The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). Conclusions The new class introduced in the CAZy database extends the traditional CAZy families, and provides a better coverage of the full extent of the lignocellulose breakdown machinery. © Levasseur et al.; licensee BioMed Central Ltd. 2013
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title_short	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes
url	https://dx.doi.org/10.1186/1754-6834-6-41
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author2	Drula, Elodie Lombard, Vincent Coutinho, Pedro M Henrissat, Bernard
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The recent discovery that members of families CBM33 and family GH61 are in fact lytic polysaccharide monooxygenases (LPMO), demands a reclassification of these families into a suitable category. Results Because lignin is invariably found together with polysaccharides in the plant cell wall and because lignin fragments are likely to act in concert with (LPMO), we have decided to join the families of lignin degradation enzymes to the LPMO families and launch a new CAZy class that we name “Auxiliary Activities” in order to accommodate a range of enzyme mechanisms and substrates related to lignocellulose conversion. Comparative analyses of these auxiliary activities in 41 fungal genomes reveal a pertinent division of several fungal groups and subgroups combining their phylogenetic origin and their nutritional mode (white vs. brown rot). 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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

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