Transcriptome of Russet Norkotah and its clonal selection, TXNS278

Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic...
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Autor*in:	Levy, Julien [verfasserIn] Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2018

Schlagwörter:	Russet Norkotah Clonal selection RNA-seq Genomic

Anmerkung:	© The Author(s) 2018

Übergeordnetes Werk:	Enthalten in: BMC Research Notes - London, 2008, 11(2018), 1 vom: 01. März
Übergeordnetes Werk:	volume:11 ; year:2018 ; number:1 ; day:01 ; month:03

Links:	Volltext

DOI / URN:	10.1186/s13104-018-3254-4

Katalog-ID:	SPR030329515

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520			\|a Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season.
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allfields	10.1186/s13104-018-3254-4 doi (DE-627)SPR030329515 (SPR)s13104-018-3254-4-e DE-627 ger DE-627 rakwb eng Levy, Julien verfasserin (orcid)0000-0002-1422-2195 aut Transcriptome of Russet Norkotah and its clonal selection, TXNS278 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) 2018 Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213 Tamborindeguy, Cecilia aut Athrey, Giridhar aut Scheuring, Douglas C. aut Koym, Jeffrey W. aut Miller, J. Creighton aut Enthalten in BMC Research Notes London, 2008 11(2018), 1 vom: 01. März (DE-627)559431805 (DE-600)2413336-X 1756-0500 nnns volume:11 year:2018 number:1 day:01 month:03 https://dx.doi.org/10.1186/s13104-018-3254-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2018 1 01 03
spelling	10.1186/s13104-018-3254-4 doi (DE-627)SPR030329515 (SPR)s13104-018-3254-4-e DE-627 ger DE-627 rakwb eng Levy, Julien verfasserin (orcid)0000-0002-1422-2195 aut Transcriptome of Russet Norkotah and its clonal selection, TXNS278 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) 2018 Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213 Tamborindeguy, Cecilia aut Athrey, Giridhar aut Scheuring, Douglas C. aut Koym, Jeffrey W. aut Miller, J. Creighton aut Enthalten in BMC Research Notes London, 2008 11(2018), 1 vom: 01. März (DE-627)559431805 (DE-600)2413336-X 1756-0500 nnns volume:11 year:2018 number:1 day:01 month:03 https://dx.doi.org/10.1186/s13104-018-3254-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2018 1 01 03
allfields_unstemmed	10.1186/s13104-018-3254-4 doi (DE-627)SPR030329515 (SPR)s13104-018-3254-4-e DE-627 ger DE-627 rakwb eng Levy, Julien verfasserin (orcid)0000-0002-1422-2195 aut Transcriptome of Russet Norkotah and its clonal selection, TXNS278 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) 2018 Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213 Tamborindeguy, Cecilia aut Athrey, Giridhar aut Scheuring, Douglas C. aut Koym, Jeffrey W. aut Miller, J. Creighton aut Enthalten in BMC Research Notes London, 2008 11(2018), 1 vom: 01. März (DE-627)559431805 (DE-600)2413336-X 1756-0500 nnns volume:11 year:2018 number:1 day:01 month:03 https://dx.doi.org/10.1186/s13104-018-3254-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2018 1 01 03
allfieldsGer	10.1186/s13104-018-3254-4 doi (DE-627)SPR030329515 (SPR)s13104-018-3254-4-e DE-627 ger DE-627 rakwb eng Levy, Julien verfasserin (orcid)0000-0002-1422-2195 aut Transcriptome of Russet Norkotah and its clonal selection, TXNS278 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) 2018 Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213 Tamborindeguy, Cecilia aut Athrey, Giridhar aut Scheuring, Douglas C. aut Koym, Jeffrey W. aut Miller, J. Creighton aut Enthalten in BMC Research Notes London, 2008 11(2018), 1 vom: 01. März (DE-627)559431805 (DE-600)2413336-X 1756-0500 nnns volume:11 year:2018 number:1 day:01 month:03 https://dx.doi.org/10.1186/s13104-018-3254-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2018 1 01 03
allfieldsSound	10.1186/s13104-018-3254-4 doi (DE-627)SPR030329515 (SPR)s13104-018-3254-4-e DE-627 ger DE-627 rakwb eng Levy, Julien verfasserin (orcid)0000-0002-1422-2195 aut Transcriptome of Russet Norkotah and its clonal selection, TXNS278 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) 2018 Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213 Tamborindeguy, Cecilia aut Athrey, Giridhar aut Scheuring, Douglas C. aut Koym, Jeffrey W. aut Miller, J. Creighton aut Enthalten in BMC Research Notes London, 2008 11(2018), 1 vom: 01. März (DE-627)559431805 (DE-600)2413336-X 1756-0500 nnns volume:11 year:2018 number:1 day:01 month:03 https://dx.doi.org/10.1186/s13104-018-3254-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 11 2018 1 01 03
language	English
source	Enthalten in BMC Research Notes 11(2018), 1 vom: 01. März volume:11 year:2018 number:1 day:01 month:03
sourceStr	Enthalten in BMC Research Notes 11(2018), 1 vom: 01. März volume:11 year:2018 number:1 day:01 month:03
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Russet Norkotah Clonal selection RNA-seq Genomic
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container_title	BMC Research Notes
authorswithroles_txt_mv	Levy, Julien @@aut@@ Tamborindeguy, Cecilia @@aut@@ Athrey, Giridhar @@aut@@ Scheuring, Douglas C. @@aut@@ Koym, Jeffrey W. @@aut@@ Miller, J. Creighton @@aut@@
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This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. 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author	Levy, Julien
spellingShingle	Levy, Julien misc Russet Norkotah misc Clonal selection misc RNA-seq misc Genomic Transcriptome of Russet Norkotah and its clonal selection, TXNS278
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topic_title	Transcriptome of Russet Norkotah and its clonal selection, TXNS278 Russet Norkotah (dpeaa)DE-He213 Clonal selection (dpeaa)DE-He213 RNA-seq (dpeaa)DE-He213 Genomic (dpeaa)DE-He213
topic	misc Russet Norkotah misc Clonal selection misc RNA-seq misc Genomic
topic_unstemmed	misc Russet Norkotah misc Clonal selection misc RNA-seq misc Genomic
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title	Transcriptome of Russet Norkotah and its clonal selection, TXNS278
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title_full	Transcriptome of Russet Norkotah and its clonal selection, TXNS278
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author_browse	Levy, Julien Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton
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title_sort	transcriptome of russet norkotah and its clonal selection, txns278
title_auth	Transcriptome of Russet Norkotah and its clonal selection, TXNS278
abstract	Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. © The Author(s) 2018
abstractGer	Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. © The Author(s) 2018
abstract_unstemmed	Objectives Potato has a large genetic diversity. This diversity is in part due to somaclonal variability that appears within potato selections for which tubers are used as seeds. However, the potato tetraploid genome, as well as the use of tubers for crop propagation, does not allow for easy genetic studies. The objective is to gain knowledge at the genomic level from standard Russet Norkotah and a subclonal Russet Norkotah selection TXNS278. Data description In this report, we used RNA-seq, which allows genome-wide gene expression analysis to sequence the transcriptomes of the subclonal Russet Norkotah selection TXNS278 with standard Russet Norkotah grown in commercial fields. Among the selections, TXNS278 appeared in a multi-year analysis in Texas as a top No 1 yielding variety. Russet Norkotah and TXNS278 leaf and root transcriptomes were sequenced at two time points during growing season. © The Author(s) 2018
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title_short	Transcriptome of Russet Norkotah and its clonal selection, TXNS278
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author2	Tamborindeguy, Cecilia Athrey, Giridhar Scheuring, Douglas C. Koym, Jeffrey W. Miller, J. Creighton
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Transcriptome of Russet Norkotah and its clonal selection, TXNS278

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