EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran
Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to m...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Noormohammadi, Zahra [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2013 |
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| Schlagwörter: |
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| Anmerkung: |
© Archana Sharma Foundation of Calcutta 2013 |
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| Übergeordnetes Werk: |
Enthalten in: The nucleus - [New Delhi] : Springer India, 2010, 56(2013), 3 vom: 28. Sept., Seite 171-178 |
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| Übergeordnetes Werk: |
volume:56 ; year:2013 ; number:3 ; day:28 ; month:09 ; pages:171-178 |
| Links: |
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| DOI / URN: |
10.1007/s13237-013-0094-4 |
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| Katalog-ID: |
SPR030978785 |
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| 100 | 1 | |a Noormohammadi, Zahra |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
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| 520 | |a Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. | ||
| 650 | 4 | |a Gene exchange |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Hybrids |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a STRUCTURE analysis |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Rahnama, Azam |4 aut | |
| 700 | 1 | |a Sheidai, Masoud |4 aut | |
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10.1007/s13237-013-0094-4 doi (DE-627)SPR030978785 (SPR)s13237-013-0094-4-e DE-627 ger DE-627 rakwb eng Noormohammadi, Zahra verfasserin aut EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Archana Sharma Foundation of Calcutta 2013 Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 Rahnama, Azam aut Sheidai, Masoud aut Enthalten in The nucleus [New Delhi] : Springer India, 2010 56(2013), 3 vom: 28. Sept., Seite 171-178 (DE-627)644282746 (DE-600)2589081-5 0976-7975 nnns volume:56 year:2013 number:3 day:28 month:09 pages:171-178 https://dx.doi.org/10.1007/s13237-013-0094-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 56 2013 3 28 09 171-178 |
| spelling |
10.1007/s13237-013-0094-4 doi (DE-627)SPR030978785 (SPR)s13237-013-0094-4-e DE-627 ger DE-627 rakwb eng Noormohammadi, Zahra verfasserin aut EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Archana Sharma Foundation of Calcutta 2013 Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 Rahnama, Azam aut Sheidai, Masoud aut Enthalten in The nucleus [New Delhi] : Springer India, 2010 56(2013), 3 vom: 28. Sept., Seite 171-178 (DE-627)644282746 (DE-600)2589081-5 0976-7975 nnns volume:56 year:2013 number:3 day:28 month:09 pages:171-178 https://dx.doi.org/10.1007/s13237-013-0094-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 56 2013 3 28 09 171-178 |
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10.1007/s13237-013-0094-4 doi (DE-627)SPR030978785 (SPR)s13237-013-0094-4-e DE-627 ger DE-627 rakwb eng Noormohammadi, Zahra verfasserin aut EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Archana Sharma Foundation of Calcutta 2013 Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 Rahnama, Azam aut Sheidai, Masoud aut Enthalten in The nucleus [New Delhi] : Springer India, 2010 56(2013), 3 vom: 28. Sept., Seite 171-178 (DE-627)644282746 (DE-600)2589081-5 0976-7975 nnns volume:56 year:2013 number:3 day:28 month:09 pages:171-178 https://dx.doi.org/10.1007/s13237-013-0094-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 56 2013 3 28 09 171-178 |
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10.1007/s13237-013-0094-4 doi (DE-627)SPR030978785 (SPR)s13237-013-0094-4-e DE-627 ger DE-627 rakwb eng Noormohammadi, Zahra verfasserin aut EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Archana Sharma Foundation of Calcutta 2013 Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 Rahnama, Azam aut Sheidai, Masoud aut Enthalten in The nucleus [New Delhi] : Springer India, 2010 56(2013), 3 vom: 28. Sept., Seite 171-178 (DE-627)644282746 (DE-600)2589081-5 0976-7975 nnns volume:56 year:2013 number:3 day:28 month:09 pages:171-178 https://dx.doi.org/10.1007/s13237-013-0094-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 56 2013 3 28 09 171-178 |
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10.1007/s13237-013-0094-4 doi (DE-627)SPR030978785 (SPR)s13237-013-0094-4-e DE-627 ger DE-627 rakwb eng Noormohammadi, Zahra verfasserin aut EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran 2013 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Archana Sharma Foundation of Calcutta 2013 Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 Rahnama, Azam aut Sheidai, Masoud aut Enthalten in The nucleus [New Delhi] : Springer India, 2010 56(2013), 3 vom: 28. Sept., Seite 171-178 (DE-627)644282746 (DE-600)2589081-5 0976-7975 nnns volume:56 year:2013 number:3 day:28 month:09 pages:171-178 https://dx.doi.org/10.1007/s13237-013-0094-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2070 GBV_ILN_2086 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 56 2013 3 28 09 171-178 |
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Noormohammadi, Zahra @@aut@@ Rahnama, Azam @@aut@@ Sheidai, Masoud @@aut@@ |
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Noormohammadi, Zahra |
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Noormohammadi, Zahra misc Gene exchange misc Hybrids misc STRUCTURE analysis EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
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EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran Gene exchange (dpeaa)DE-He213 Hybrids (dpeaa)DE-He213 STRUCTURE analysis (dpeaa)DE-He213 |
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EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
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EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
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Noormohammadi, Zahra Rahnama, Azam Sheidai, Masoud |
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est-ssr and ssr analyses of genetic diversity in diploid cotton genotypes from iran |
| title_auth |
EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
| abstract |
Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. © Archana Sharma Foundation of Calcutta 2013 |
| abstractGer |
Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. © Archana Sharma Foundation of Calcutta 2013 |
| abstract_unstemmed |
Abstract There are 21 diploid species/genotypes of the cotton genus Gossypium L. that are cultivated in many regions of Iran. Due to continuous artificial selection and cultivation practice there is a decrease in its genetic diversity causing genetic erosion. Therefore, cotton breeders continue to make various cross combinations among available cultivars. Genetic diversity analysis was considered in 21 cotton genotypes by using SSR and EST-derived SSR markers. Amplification of the EST-SSR and SSR markers produced 19 reproducible alleles in the cotton plants studied. The mean number of effective alleles was 1.12, and the mean value of Shannon’s information index was 0.10. The mean value for genetic polymorphism was 20 % in cotton plants studied. AMOVA test showed that only 2 % of total genetic variation is accounted in 3 populations groups, of which 98 % is due to genetic variations among accessions in each population group. Neighbor Joining tree and PCoA plot showed genetic affinity between plants from different populations. STRUCTURE result confirmed AMOVA test and showed presence of genetic diversity within each presumed population groups. Reticulogram showed gene exchange among some of the cotton plants. Gene exchange/allelic similarity were observed between VTDL (G. arboreum) and Semnan (G. herbaceum) genotypes and between some interspecific hybrids. © Archana Sharma Foundation of Calcutta 2013 |
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3 |
| title_short |
EST-SSR and SSR analyses of genetic diversity in diploid cotton genotypes from Iran |
| url |
https://dx.doi.org/10.1007/s13237-013-0094-4 |
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| author2 |
Rahnama, Azam Sheidai, Masoud |
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Rahnama, Azam Sheidai, Masoud |
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| doi_str |
10.1007/s13237-013-0094-4 |
| up_date |
2024-07-03T21:17:00.390Z |
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1803594152427913216 |
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