Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae)
Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogeno...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Zhang, Renyi [verfasserIn] |
|---|
| Format: |
E-Artikel |
|---|---|
| Sprache: |
Englisch |
| Erschienen: |
2018 |
|---|
| Schlagwörter: |
|---|
| Anmerkung: |
© The Genetics Society of Korea and Springer Nature B.V. 2018 |
|---|
| Übergeordnetes Werk: |
Enthalten in: Genes & Genomics - The Genetics Society of Korea, 2010, 40(2018), 10 vom: 08. Juni, Seite 1033-1040 |
|---|---|
| Übergeordnetes Werk: |
volume:40 ; year:2018 ; number:10 ; day:08 ; month:06 ; pages:1033-1040 |
| Links: |
|---|
| DOI / URN: |
10.1007/s13258-018-0711-3 |
|---|
| Katalog-ID: |
SPR031105599 |
|---|
| LEADER | 01000caa a22002652 4500 | ||
|---|---|---|---|
| 001 | SPR031105599 | ||
| 003 | DE-627 | ||
| 005 | 20230331065821.0 | ||
| 007 | cr uuu---uuuuu | ||
| 008 | 201007s2018 xx |||||o 00| ||eng c | ||
| 024 | 7 | |a 10.1007/s13258-018-0711-3 |2 doi | |
| 035 | |a (DE-627)SPR031105599 | ||
| 035 | |a (SPR)s13258-018-0711-3-e | ||
| 040 | |a DE-627 |b ger |c DE-627 |e rakwb | ||
| 041 | |a eng | ||
| 100 | 1 | |a Zhang, Renyi |e verfasserin |0 (orcid)0000-0002-3647-1416 |4 aut | |
| 245 | 1 | 0 | |a Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| 264 | 1 | |c 2018 | |
| 336 | |a Text |b txt |2 rdacontent | ||
| 337 | |a Computermedien |b c |2 rdamedia | ||
| 338 | |a Online-Ressource |b cr |2 rdacarrier | ||
| 500 | |a © The Genetics Society of Korea and Springer Nature B.V. 2018 | ||
| 520 | |a Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. | ||
| 650 | 4 | |a Cavefish |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Mitochondrial genome |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Phylogenetic relationship |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Wang, Xue |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Genes & Genomics |d The Genetics Society of Korea, 2010 |g 40(2018), 10 vom: 08. Juni, Seite 1033-1040 |w (DE-627)SPR031096425 |7 nnns |
| 773 | 1 | 8 | |g volume:40 |g year:2018 |g number:10 |g day:08 |g month:06 |g pages:1033-1040 |
| 856 | 4 | 0 | |u https://dx.doi.org/10.1007/s13258-018-0711-3 |z lizenzpflichtig |3 Volltext |
| 912 | |a GBV_USEFLAG_A | ||
| 912 | |a SYSFLAG_A | ||
| 912 | |a GBV_SPRINGER | ||
| 951 | |a AR | ||
| 952 | |d 40 |j 2018 |e 10 |b 08 |c 06 |h 1033-1040 | ||
| author_variant |
r z rz x w xw |
|---|---|
| matchkey_str |
zhangrenyiwangxue:2018----:hrceiainnpyoeeiaayioteopeeioeoefrrcvfssnccohiuml |
| hierarchy_sort_str |
2018 |
| publishDate |
2018 |
| allfields |
10.1007/s13258-018-0711-3 doi (DE-627)SPR031105599 (SPR)s13258-018-0711-3-e DE-627 ger DE-627 rakwb eng Zhang, Renyi verfasserin (orcid)0000-0002-3647-1416 aut Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Genetics Society of Korea and Springer Nature B.V. 2018 Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 Wang, Xue aut Enthalten in Genes & Genomics The Genetics Society of Korea, 2010 40(2018), 10 vom: 08. Juni, Seite 1033-1040 (DE-627)SPR031096425 nnns volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 https://dx.doi.org/10.1007/s13258-018-0711-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER AR 40 2018 10 08 06 1033-1040 |
| spelling |
10.1007/s13258-018-0711-3 doi (DE-627)SPR031105599 (SPR)s13258-018-0711-3-e DE-627 ger DE-627 rakwb eng Zhang, Renyi verfasserin (orcid)0000-0002-3647-1416 aut Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Genetics Society of Korea and Springer Nature B.V. 2018 Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 Wang, Xue aut Enthalten in Genes & Genomics The Genetics Society of Korea, 2010 40(2018), 10 vom: 08. Juni, Seite 1033-1040 (DE-627)SPR031096425 nnns volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 https://dx.doi.org/10.1007/s13258-018-0711-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER AR 40 2018 10 08 06 1033-1040 |
| allfields_unstemmed |
10.1007/s13258-018-0711-3 doi (DE-627)SPR031105599 (SPR)s13258-018-0711-3-e DE-627 ger DE-627 rakwb eng Zhang, Renyi verfasserin (orcid)0000-0002-3647-1416 aut Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Genetics Society of Korea and Springer Nature B.V. 2018 Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 Wang, Xue aut Enthalten in Genes & Genomics The Genetics Society of Korea, 2010 40(2018), 10 vom: 08. Juni, Seite 1033-1040 (DE-627)SPR031096425 nnns volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 https://dx.doi.org/10.1007/s13258-018-0711-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER AR 40 2018 10 08 06 1033-1040 |
| allfieldsGer |
10.1007/s13258-018-0711-3 doi (DE-627)SPR031105599 (SPR)s13258-018-0711-3-e DE-627 ger DE-627 rakwb eng Zhang, Renyi verfasserin (orcid)0000-0002-3647-1416 aut Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Genetics Society of Korea and Springer Nature B.V. 2018 Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 Wang, Xue aut Enthalten in Genes & Genomics The Genetics Society of Korea, 2010 40(2018), 10 vom: 08. Juni, Seite 1033-1040 (DE-627)SPR031096425 nnns volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 https://dx.doi.org/10.1007/s13258-018-0711-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER AR 40 2018 10 08 06 1033-1040 |
| allfieldsSound |
10.1007/s13258-018-0711-3 doi (DE-627)SPR031105599 (SPR)s13258-018-0711-3-e DE-627 ger DE-627 rakwb eng Zhang, Renyi verfasserin (orcid)0000-0002-3647-1416 aut Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) 2018 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Genetics Society of Korea and Springer Nature B.V. 2018 Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 Wang, Xue aut Enthalten in Genes & Genomics The Genetics Society of Korea, 2010 40(2018), 10 vom: 08. Juni, Seite 1033-1040 (DE-627)SPR031096425 nnns volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 https://dx.doi.org/10.1007/s13258-018-0711-3 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER AR 40 2018 10 08 06 1033-1040 |
| language |
English |
| source |
Enthalten in Genes & Genomics 40(2018), 10 vom: 08. Juni, Seite 1033-1040 volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 |
| sourceStr |
Enthalten in Genes & Genomics 40(2018), 10 vom: 08. Juni, Seite 1033-1040 volume:40 year:2018 number:10 day:08 month:06 pages:1033-1040 |
| format_phy_str_mv |
Article |
| institution |
findex.gbv.de |
| topic_facet |
Cavefish Mitochondrial genome Phylogenetic relationship |
| isfreeaccess_bool |
false |
| container_title |
Genes & Genomics |
| authorswithroles_txt_mv |
Zhang, Renyi @@aut@@ Wang, Xue @@aut@@ |
| publishDateDaySort_date |
2018-06-08T00:00:00Z |
| hierarchy_top_id |
SPR031096425 |
| id |
SPR031105599 |
| language_de |
englisch |
| fullrecord |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a22002652 4500</leader><controlfield tag="001">SPR031105599</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20230331065821.0</controlfield><controlfield tag="007">cr uuu---uuuuu</controlfield><controlfield tag="008">201007s2018 xx |||||o 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.1007/s13258-018-0711-3</subfield><subfield code="2">doi</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)SPR031105599</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(SPR)s13258-018-0711-3-e</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="100" ind1="1" ind2=" "><subfield code="a">Zhang, Renyi</subfield><subfield code="e">verfasserin</subfield><subfield code="0">(orcid)0000-0002-3647-1416</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae)</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2018</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">Computermedien</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Online-Ressource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a">© The Genetics Society of Korea and Springer Nature B.V. 2018</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Cavefish</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Mitochondrial genome</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Phylogenetic relationship</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Wang, Xue</subfield><subfield code="4">aut</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">Enthalten in</subfield><subfield code="t">Genes & Genomics</subfield><subfield code="d">The Genetics Society of Korea, 2010</subfield><subfield code="g">40(2018), 10 vom: 08. Juni, Seite 1033-1040</subfield><subfield code="w">(DE-627)SPR031096425</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:40</subfield><subfield code="g">year:2018</subfield><subfield code="g">number:10</subfield><subfield code="g">day:08</subfield><subfield code="g">month:06</subfield><subfield code="g">pages:1033-1040</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://dx.doi.org/10.1007/s13258-018-0711-3</subfield><subfield code="z">lizenzpflichtig</subfield><subfield code="3">Volltext</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_SPRINGER</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">40</subfield><subfield code="j">2018</subfield><subfield code="e">10</subfield><subfield code="b">08</subfield><subfield code="c">06</subfield><subfield code="h">1033-1040</subfield></datafield></record></collection>
|
| author |
Zhang, Renyi |
| spellingShingle |
Zhang, Renyi misc Cavefish misc Mitochondrial genome misc Phylogenetic relationship Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| authorStr |
Zhang, Renyi |
| ppnlink_with_tag_str_mv |
@@773@@(DE-627)SPR031096425 |
| format |
electronic Article |
| delete_txt_mv |
keep |
| author_role |
aut aut |
| collection |
springer |
| remote_str |
true |
| illustrated |
Not Illustrated |
| topic_title |
Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) Cavefish (dpeaa)DE-He213 Mitochondrial genome (dpeaa)DE-He213 Phylogenetic relationship (dpeaa)DE-He213 |
| topic |
misc Cavefish misc Mitochondrial genome misc Phylogenetic relationship |
| topic_unstemmed |
misc Cavefish misc Mitochondrial genome misc Phylogenetic relationship |
| topic_browse |
misc Cavefish misc Mitochondrial genome misc Phylogenetic relationship |
| format_facet |
Elektronische Aufsätze Aufsätze Elektronische Ressource |
| format_main_str_mv |
Text Zeitschrift/Artikel |
| carriertype_str_mv |
cr |
| hierarchy_parent_title |
Genes & Genomics |
| hierarchy_parent_id |
SPR031096425 |
| hierarchy_top_title |
Genes & Genomics |
| isfreeaccess_txt |
false |
| familylinks_str_mv |
(DE-627)SPR031096425 |
| title |
Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| ctrlnum |
(DE-627)SPR031105599 (SPR)s13258-018-0711-3-e |
| title_full |
Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| author_sort |
Zhang, Renyi |
| journal |
Genes & Genomics |
| journalStr |
Genes & Genomics |
| lang_code |
eng |
| isOA_bool |
false |
| recordtype |
marc |
| publishDateSort |
2018 |
| contenttype_str_mv |
txt |
| container_start_page |
1033 |
| author_browse |
Zhang, Renyi Wang, Xue |
| container_volume |
40 |
| format_se |
Elektronische Aufsätze |
| author-letter |
Zhang, Renyi |
| doi_str_mv |
10.1007/s13258-018-0711-3 |
| normlink |
(ORCID)0000-0002-3647-1416 |
| normlink_prefix_str_mv |
(orcid)0000-0002-3647-1416 |
| title_sort |
characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, sinocyclocheilus multipunctatus (cypriniformes: cyprinidae) |
| title_auth |
Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| abstract |
Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. © The Genetics Society of Korea and Springer Nature B.V. 2018 |
| abstractGer |
Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. © The Genetics Society of Korea and Springer Nature B.V. 2018 |
| abstract_unstemmed |
Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus. © The Genetics Society of Korea and Springer Nature B.V. 2018 |
| collection_details |
GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER |
| container_issue |
10 |
| title_short |
Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae) |
| url |
https://dx.doi.org/10.1007/s13258-018-0711-3 |
| remote_bool |
true |
| author2 |
Wang, Xue |
| author2Str |
Wang, Xue |
| ppnlink |
SPR031096425 |
| mediatype_str_mv |
c |
| isOA_txt |
false |
| hochschulschrift_bool |
false |
| doi_str |
10.1007/s13258-018-0711-3 |
| up_date |
2024-07-03T22:00:13.371Z |
| _version_ |
1803596871366606848 |
| fullrecord_marcxml |
<?xml version="1.0" encoding="UTF-8"?><collection xmlns="http://www.loc.gov/MARC21/slim"><record><leader>01000caa a22002652 4500</leader><controlfield tag="001">SPR031105599</controlfield><controlfield tag="003">DE-627</controlfield><controlfield tag="005">20230331065821.0</controlfield><controlfield tag="007">cr uuu---uuuuu</controlfield><controlfield tag="008">201007s2018 xx |||||o 00| ||eng c</controlfield><datafield tag="024" ind1="7" ind2=" "><subfield code="a">10.1007/s13258-018-0711-3</subfield><subfield code="2">doi</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(DE-627)SPR031105599</subfield></datafield><datafield tag="035" ind1=" " ind2=" "><subfield code="a">(SPR)s13258-018-0711-3-e</subfield></datafield><datafield tag="040" ind1=" " ind2=" "><subfield code="a">DE-627</subfield><subfield code="b">ger</subfield><subfield code="c">DE-627</subfield><subfield code="e">rakwb</subfield></datafield><datafield tag="041" ind1=" " ind2=" "><subfield code="a">eng</subfield></datafield><datafield tag="100" ind1="1" ind2=" "><subfield code="a">Zhang, Renyi</subfield><subfield code="e">verfasserin</subfield><subfield code="0">(orcid)0000-0002-3647-1416</subfield><subfield code="4">aut</subfield></datafield><datafield tag="245" ind1="1" ind2="0"><subfield code="a">Characterization and phylogenetic analysis of the complete mitogenome of a rare cavefish, Sinocyclocheilus multipunctatus (Cypriniformes: Cyprinidae)</subfield></datafield><datafield tag="264" ind1=" " ind2="1"><subfield code="c">2018</subfield></datafield><datafield tag="336" ind1=" " ind2=" "><subfield code="a">Text</subfield><subfield code="b">txt</subfield><subfield code="2">rdacontent</subfield></datafield><datafield tag="337" ind1=" " ind2=" "><subfield code="a">Computermedien</subfield><subfield code="b">c</subfield><subfield code="2">rdamedia</subfield></datafield><datafield tag="338" ind1=" " ind2=" "><subfield code="a">Online-Ressource</subfield><subfield code="b">cr</subfield><subfield code="2">rdacarrier</subfield></datafield><datafield tag="500" ind1=" " ind2=" "><subfield code="a">© The Genetics Society of Korea and Springer Nature B.V. 2018</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract The genus Sinocyclocheilus is a representative group of cave creatures. However, genetic studies on Sinocyclocheilus are rare. The primary objective of this study was to explore the structure and feature of the complete mitochondrial genome of S. multipunctatus, and reconstruct the mitogenomic phylogeny of Sinocyclocheilus. The mitochondrial DNA of S. multipunctatus was amplified by overlapping PCR fragments. The mitogenome was assembled by the SeqMan and annotated using MitoAnnotator. The phylogenetic tree was established using the Bayesian inference and Maximum likelihood methods. The mitogenome of S. multipunctatus is a typical circular molecule of 16,586 bp with base composition A (31.25%), T (25.90%), G (16.35%), and C (26.50%), and consists of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) genes, two ribosomal RNAs, and a 931 bp control region. Phylogenetic analysis reveals two clades in the Sinocyclocheilus with robust support. S. multipunctatus is close to a newly discovered cavefish, S. ronganensis. We obtained and described the complete mitogenome of S. multipunctatus, and investigated its phylogenetic status, which may provide a valuable resource for future phylogenetic analyses and population genetic studies in Sinocyclocheilus.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Cavefish</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Mitochondrial genome</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Phylogenetic relationship</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Wang, Xue</subfield><subfield code="4">aut</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">Enthalten in</subfield><subfield code="t">Genes & Genomics</subfield><subfield code="d">The Genetics Society of Korea, 2010</subfield><subfield code="g">40(2018), 10 vom: 08. Juni, Seite 1033-1040</subfield><subfield code="w">(DE-627)SPR031096425</subfield><subfield code="7">nnns</subfield></datafield><datafield tag="773" ind1="1" ind2="8"><subfield code="g">volume:40</subfield><subfield code="g">year:2018</subfield><subfield code="g">number:10</subfield><subfield code="g">day:08</subfield><subfield code="g">month:06</subfield><subfield code="g">pages:1033-1040</subfield></datafield><datafield tag="856" ind1="4" ind2="0"><subfield code="u">https://dx.doi.org/10.1007/s13258-018-0711-3</subfield><subfield code="z">lizenzpflichtig</subfield><subfield code="3">Volltext</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_USEFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">SYSFLAG_A</subfield></datafield><datafield tag="912" ind1=" " ind2=" "><subfield code="a">GBV_SPRINGER</subfield></datafield><datafield tag="951" ind1=" " ind2=" "><subfield code="a">AR</subfield></datafield><datafield tag="952" ind1=" " ind2=" "><subfield code="d">40</subfield><subfield code="j">2018</subfield><subfield code="e">10</subfield><subfield code="b">08</subfield><subfield code="c">06</subfield><subfield code="h">1033-1040</subfield></datafield></record></collection>
|
| score |
7.4002123 |