OBIB-a novel ontology for biobanking
Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a...
Ausführliche Beschreibung
Autor*in: |
Brochhausen, Mathias [verfasserIn] |
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Format: |
E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2016 |
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Schlagwörter: |
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Anmerkung: |
© Brochhausen et al. 2016 |
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Übergeordnetes Werk: |
Enthalten in: Journal of biomedical semantics - London : BioMed Central, 2010, 7(2016), 1 vom: 02. Mai |
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Übergeordnetes Werk: |
volume:7 ; year:2016 ; number:1 ; day:02 ; month:05 |
Links: |
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DOI / URN: |
10.1186/s13326-016-0068-y |
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Katalog-ID: |
SPR031355927 |
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520 | |a Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. | ||
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700 | 1 | |a Ellis, Helena Judge |4 aut | |
700 | 1 | |a Stoeckert, Christian J. |4 aut | |
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10.1186/s13326-016-0068-y doi (DE-627)SPR031355927 (SPR)s13326-016-0068-y-e DE-627 ger DE-627 rakwb eng Brochhausen, Mathias verfasserin aut OBIB-a novel ontology for biobanking 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Brochhausen et al. 2016 Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. Ontologies (dpeaa)DE-He213 Biobanking (dpeaa)DE-He213 Biorepository (dpeaa)DE-He213 Terminology (dpeaa)DE-He213 Zheng, Jie aut Birtwell, David aut Williams, Heather aut Masci, Anna Maria aut Ellis, Helena Judge aut Stoeckert, Christian J. aut Enthalten in Journal of biomedical semantics London : BioMed Central, 2010 7(2016), 1 vom: 02. Mai (DE-627)624250865 (DE-600)2548651-2 2041-1480 nnns volume:7 year:2016 number:1 day:02 month:05 https://dx.doi.org/10.1186/s13326-016-0068-y kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2016 1 02 05 |
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10.1186/s13326-016-0068-y doi (DE-627)SPR031355927 (SPR)s13326-016-0068-y-e DE-627 ger DE-627 rakwb eng Brochhausen, Mathias verfasserin aut OBIB-a novel ontology for biobanking 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Brochhausen et al. 2016 Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. Ontologies (dpeaa)DE-He213 Biobanking (dpeaa)DE-He213 Biorepository (dpeaa)DE-He213 Terminology (dpeaa)DE-He213 Zheng, Jie aut Birtwell, David aut Williams, Heather aut Masci, Anna Maria aut Ellis, Helena Judge aut Stoeckert, Christian J. aut Enthalten in Journal of biomedical semantics London : BioMed Central, 2010 7(2016), 1 vom: 02. Mai (DE-627)624250865 (DE-600)2548651-2 2041-1480 nnns volume:7 year:2016 number:1 day:02 month:05 https://dx.doi.org/10.1186/s13326-016-0068-y kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2016 1 02 05 |
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10.1186/s13326-016-0068-y doi (DE-627)SPR031355927 (SPR)s13326-016-0068-y-e DE-627 ger DE-627 rakwb eng Brochhausen, Mathias verfasserin aut OBIB-a novel ontology for biobanking 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Brochhausen et al. 2016 Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. Ontologies (dpeaa)DE-He213 Biobanking (dpeaa)DE-He213 Biorepository (dpeaa)DE-He213 Terminology (dpeaa)DE-He213 Zheng, Jie aut Birtwell, David aut Williams, Heather aut Masci, Anna Maria aut Ellis, Helena Judge aut Stoeckert, Christian J. aut Enthalten in Journal of biomedical semantics London : BioMed Central, 2010 7(2016), 1 vom: 02. Mai (DE-627)624250865 (DE-600)2548651-2 2041-1480 nnns volume:7 year:2016 number:1 day:02 month:05 https://dx.doi.org/10.1186/s13326-016-0068-y kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2016 1 02 05 |
allfieldsGer |
10.1186/s13326-016-0068-y doi (DE-627)SPR031355927 (SPR)s13326-016-0068-y-e DE-627 ger DE-627 rakwb eng Brochhausen, Mathias verfasserin aut OBIB-a novel ontology for biobanking 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Brochhausen et al. 2016 Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. Ontologies (dpeaa)DE-He213 Biobanking (dpeaa)DE-He213 Biorepository (dpeaa)DE-He213 Terminology (dpeaa)DE-He213 Zheng, Jie aut Birtwell, David aut Williams, Heather aut Masci, Anna Maria aut Ellis, Helena Judge aut Stoeckert, Christian J. aut Enthalten in Journal of biomedical semantics London : BioMed Central, 2010 7(2016), 1 vom: 02. Mai (DE-627)624250865 (DE-600)2548651-2 2041-1480 nnns volume:7 year:2016 number:1 day:02 month:05 https://dx.doi.org/10.1186/s13326-016-0068-y kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2016 1 02 05 |
allfieldsSound |
10.1186/s13326-016-0068-y doi (DE-627)SPR031355927 (SPR)s13326-016-0068-y-e DE-627 ger DE-627 rakwb eng Brochhausen, Mathias verfasserin aut OBIB-a novel ontology for biobanking 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Brochhausen et al. 2016 Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. Ontologies (dpeaa)DE-He213 Biobanking (dpeaa)DE-He213 Biorepository (dpeaa)DE-He213 Terminology (dpeaa)DE-He213 Zheng, Jie aut Birtwell, David aut Williams, Heather aut Masci, Anna Maria aut Ellis, Helena Judge aut Stoeckert, Christian J. aut Enthalten in Journal of biomedical semantics London : BioMed Central, 2010 7(2016), 1 vom: 02. Mai (DE-627)624250865 (DE-600)2548651-2 2041-1480 nnns volume:7 year:2016 number:1 day:02 month:05 https://dx.doi.org/10.1186/s13326-016-0068-y kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_206 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2009 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2055 GBV_ILN_2111 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2016 1 02 05 |
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Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. 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Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. © Brochhausen et al. 2016 |
abstractGer |
Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. © Brochhausen et al. 2016 |
abstract_unstemmed |
Background Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related data. Hitherto no ontology provided the coverage needed to capture a broad spectrum of biobank user scenarios. Methods Based in the principles laid out by the Open Biological and Biomedical Ontologies Foundry two biobanking ontologies have been developed. These two ontologies were merged using a modular approach consistent with the initial development principles. The merging was facilitated by the fact that both ontologies use the same Upper Ontology and re-use classes from a similar set of pre-existing ontologies. Results Based on the two previous ontologies the Ontology for Biobanking (http://purl.obolibrary.org/obo/obib.owl) was created. Due to the fact that there was no overlap between the two source ontologies the coverage of the resulting ontology is significantly larger than of the two source ontologies. The ontology is successfully used in managing biobank information of the Penn Medicine BioBank. Conclusions Sharing development principles and Upper Ontologies facilitates subsequent merging of ontologies to achieve a broader coverage. © Brochhausen et al. 2016 |
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score |
7.401161 |