Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India
Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on enve...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Sharma, Pankaj [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2016 |
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| Schlagwörter: |
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| Anmerkung: |
© Indian Virological Society 2016 |
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| Übergeordnetes Werk: |
Enthalten in: Indian journal of virology - [New Delhi] : Springer India, 2010, 27(2016), 4 vom: 14. Sept., Seite 400-404 |
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| Übergeordnetes Werk: |
volume:27 ; year:2016 ; number:4 ; day:14 ; month:09 ; pages:400-404 |
| Links: |
|---|
| DOI / URN: |
10.1007/s13337-016-0346-4 |
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SPR031383351 |
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| 520 | |a Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. | ||
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10.1007/s13337-016-0346-4 doi (DE-627)SPR031383351 (SPR)s13337-016-0346-4-e DE-627 ger DE-627 rakwb eng Sharma, Pankaj verfasserin aut Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Indian Virological Society 2016 Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. Dengue (dpeaa)DE-He213 Molecular epidemiology (dpeaa)DE-He213 Envelope (dpeaa)DE-He213 Evolutionary analysis (dpeaa)DE-He213 Mittal, Veena aut Chhabra, Mala aut Kumari, Roop aut Singh, Priyanka aut Venkatesh, Srinivas aut Enthalten in Indian journal of virology [New Delhi] : Springer India, 2010 27(2016), 4 vom: 14. Sept., Seite 400-404 (DE-627)635133717 (DE-600)2572261-X 0974-0120 nnns volume:27 year:2016 number:4 day:14 month:09 pages:400-404 https://dx.doi.org/10.1007/s13337-016-0346-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_70 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 AR 27 2016 4 14 09 400-404 |
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10.1007/s13337-016-0346-4 doi (DE-627)SPR031383351 (SPR)s13337-016-0346-4-e DE-627 ger DE-627 rakwb eng Sharma, Pankaj verfasserin aut Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Indian Virological Society 2016 Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. Dengue (dpeaa)DE-He213 Molecular epidemiology (dpeaa)DE-He213 Envelope (dpeaa)DE-He213 Evolutionary analysis (dpeaa)DE-He213 Mittal, Veena aut Chhabra, Mala aut Kumari, Roop aut Singh, Priyanka aut Venkatesh, Srinivas aut Enthalten in Indian journal of virology [New Delhi] : Springer India, 2010 27(2016), 4 vom: 14. Sept., Seite 400-404 (DE-627)635133717 (DE-600)2572261-X 0974-0120 nnns volume:27 year:2016 number:4 day:14 month:09 pages:400-404 https://dx.doi.org/10.1007/s13337-016-0346-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_70 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 AR 27 2016 4 14 09 400-404 |
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10.1007/s13337-016-0346-4 doi (DE-627)SPR031383351 (SPR)s13337-016-0346-4-e DE-627 ger DE-627 rakwb eng Sharma, Pankaj verfasserin aut Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Indian Virological Society 2016 Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. Dengue (dpeaa)DE-He213 Molecular epidemiology (dpeaa)DE-He213 Envelope (dpeaa)DE-He213 Evolutionary analysis (dpeaa)DE-He213 Mittal, Veena aut Chhabra, Mala aut Kumari, Roop aut Singh, Priyanka aut Venkatesh, Srinivas aut Enthalten in Indian journal of virology [New Delhi] : Springer India, 2010 27(2016), 4 vom: 14. Sept., Seite 400-404 (DE-627)635133717 (DE-600)2572261-X 0974-0120 nnns volume:27 year:2016 number:4 day:14 month:09 pages:400-404 https://dx.doi.org/10.1007/s13337-016-0346-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_70 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 AR 27 2016 4 14 09 400-404 |
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10.1007/s13337-016-0346-4 doi (DE-627)SPR031383351 (SPR)s13337-016-0346-4-e DE-627 ger DE-627 rakwb eng Sharma, Pankaj verfasserin aut Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Indian Virological Society 2016 Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. Dengue (dpeaa)DE-He213 Molecular epidemiology (dpeaa)DE-He213 Envelope (dpeaa)DE-He213 Evolutionary analysis (dpeaa)DE-He213 Mittal, Veena aut Chhabra, Mala aut Kumari, Roop aut Singh, Priyanka aut Venkatesh, Srinivas aut Enthalten in Indian journal of virology [New Delhi] : Springer India, 2010 27(2016), 4 vom: 14. Sept., Seite 400-404 (DE-627)635133717 (DE-600)2572261-X 0974-0120 nnns volume:27 year:2016 number:4 day:14 month:09 pages:400-404 https://dx.doi.org/10.1007/s13337-016-0346-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_70 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 AR 27 2016 4 14 09 400-404 |
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10.1007/s13337-016-0346-4 doi (DE-627)SPR031383351 (SPR)s13337-016-0346-4-e DE-627 ger DE-627 rakwb eng Sharma, Pankaj verfasserin aut Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India 2016 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Indian Virological Society 2016 Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. Dengue (dpeaa)DE-He213 Molecular epidemiology (dpeaa)DE-He213 Envelope (dpeaa)DE-He213 Evolutionary analysis (dpeaa)DE-He213 Mittal, Veena aut Chhabra, Mala aut Kumari, Roop aut Singh, Priyanka aut Venkatesh, Srinivas aut Enthalten in Indian journal of virology [New Delhi] : Springer India, 2010 27(2016), 4 vom: 14. Sept., Seite 400-404 (DE-627)635133717 (DE-600)2572261-X 0974-0120 nnns volume:27 year:2016 number:4 day:14 month:09 pages:400-404 https://dx.doi.org/10.1007/s13337-016-0346-4 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_70 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2055 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2068 GBV_ILN_2106 GBV_ILN_2108 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2116 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2190 AR 27 2016 4 14 09 400-404 |
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Molecular epidemiology and evolutionary analysis of dengue virus type 2, circulating in Delhi, India |
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Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. © Indian Virological Society 2016 |
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Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. © Indian Virological Society 2016 |
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Abstract Dengue virus type 2 (DENV-2) has been associated with severe dengue outbreaks in many countries including India. Its predominance was recorded nearly after a decade in the capital city, Delhi in 2013. The present study characterizes DENV-2 circulated during 2013–2014. Analysis based on envelope (E) gene showed the presence of two clades (I and II) of DENV-2, within the Cosmopolitan genotype. Analysis of time of most recent common ancestor revealed the existence of clade I for more than a decade (95 % HPD 13–16 years) however, clade II showed comparatively recent emergence (95 % HPD 5–13 years). Presence of different clades is of high significance as this may result in increased virus transmission and major outbreaks. Further, the presence of a unique amino acid substitution, Q325H was also observed in an isolate; 14/D2/Del/2013 (KT717981). This substitution falls in immune epitope (epitope id: 150268) and may have important role in host immune response. © Indian Virological Society 2016 |
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