Microbiome of vineyard soils is shaped by geography and management

Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of n...
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Autor*in:	Coller, Emanuela [verfasserIn] Cestaro, Alessandro [verfasserIn] Zanzotti, Roberto [verfasserIn] Bertoldi, Daniela [verfasserIn] Pindo, Massimo [verfasserIn] Larger, Simone [verfasserIn] Albanese, Davide [verfasserIn] Mescalchin, Enzo [verfasserIn] Donati, Claudio [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2019

Übergeordnetes Werk:	Enthalten in: Microbiome - London : Biomed Central, 2013, 7(2019), 1 vom: 08. Nov.
Übergeordnetes Werk:	volume:7 ; year:2019 ; number:1 ; day:08 ; month:11

Links:	Volltext

DOI / URN:	10.1186/s40168-019-0758-7

Katalog-ID:	SPR033291322

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520			\|a Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability.
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allfields	10.1186/s40168-019-0758-7 doi (DE-627)SPR033291322 (SPR)s40168-019-0758-7-e DE-627 ger DE-627 rakwb eng 570 ASE Coller, Emanuela verfasserin aut Microbiome of vineyard soils is shaped by geography and management 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability. Cestaro, Alessandro verfasserin aut Zanzotti, Roberto verfasserin aut Bertoldi, Daniela verfasserin aut Pindo, Massimo verfasserin aut Larger, Simone verfasserin aut Albanese, Davide verfasserin aut Mescalchin, Enzo verfasserin aut Donati, Claudio verfasserin aut Enthalten in Microbiome London : Biomed Central, 2013 7(2019), 1 vom: 08. Nov. (DE-627)734146140 (DE-600)2697425-3 2049-2618 nnns volume:7 year:2019 number:1 day:08 month:11 https://dx.doi.org/10.1186/s40168-019-0758-7 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2019 1 08 11
spelling	10.1186/s40168-019-0758-7 doi (DE-627)SPR033291322 (SPR)s40168-019-0758-7-e DE-627 ger DE-627 rakwb eng 570 ASE Coller, Emanuela verfasserin aut Microbiome of vineyard soils is shaped by geography and management 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability. Cestaro, Alessandro verfasserin aut Zanzotti, Roberto verfasserin aut Bertoldi, Daniela verfasserin aut Pindo, Massimo verfasserin aut Larger, Simone verfasserin aut Albanese, Davide verfasserin aut Mescalchin, Enzo verfasserin aut Donati, Claudio verfasserin aut Enthalten in Microbiome London : Biomed Central, 2013 7(2019), 1 vom: 08. Nov. (DE-627)734146140 (DE-600)2697425-3 2049-2618 nnns volume:7 year:2019 number:1 day:08 month:11 https://dx.doi.org/10.1186/s40168-019-0758-7 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2019 1 08 11
allfields_unstemmed	10.1186/s40168-019-0758-7 doi (DE-627)SPR033291322 (SPR)s40168-019-0758-7-e DE-627 ger DE-627 rakwb eng 570 ASE Coller, Emanuela verfasserin aut Microbiome of vineyard soils is shaped by geography and management 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability. Cestaro, Alessandro verfasserin aut Zanzotti, Roberto verfasserin aut Bertoldi, Daniela verfasserin aut Pindo, Massimo verfasserin aut Larger, Simone verfasserin aut Albanese, Davide verfasserin aut Mescalchin, Enzo verfasserin aut Donati, Claudio verfasserin aut Enthalten in Microbiome London : Biomed Central, 2013 7(2019), 1 vom: 08. Nov. (DE-627)734146140 (DE-600)2697425-3 2049-2618 nnns volume:7 year:2019 number:1 day:08 month:11 https://dx.doi.org/10.1186/s40168-019-0758-7 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2019 1 08 11
allfieldsGer	10.1186/s40168-019-0758-7 doi (DE-627)SPR033291322 (SPR)s40168-019-0758-7-e DE-627 ger DE-627 rakwb eng 570 ASE Coller, Emanuela verfasserin aut Microbiome of vineyard soils is shaped by geography and management 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability. Cestaro, Alessandro verfasserin aut Zanzotti, Roberto verfasserin aut Bertoldi, Daniela verfasserin aut Pindo, Massimo verfasserin aut Larger, Simone verfasserin aut Albanese, Davide verfasserin aut Mescalchin, Enzo verfasserin aut Donati, Claudio verfasserin aut Enthalten in Microbiome London : Biomed Central, 2013 7(2019), 1 vom: 08. Nov. (DE-627)734146140 (DE-600)2697425-3 2049-2618 nnns volume:7 year:2019 number:1 day:08 month:11 https://dx.doi.org/10.1186/s40168-019-0758-7 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2019 1 08 11
allfieldsSound	10.1186/s40168-019-0758-7 doi (DE-627)SPR033291322 (SPR)s40168-019-0758-7-e DE-627 ger DE-627 rakwb eng 570 ASE Coller, Emanuela verfasserin aut Microbiome of vineyard soils is shaped by geography and management 2019 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability. Cestaro, Alessandro verfasserin aut Zanzotti, Roberto verfasserin aut Bertoldi, Daniela verfasserin aut Pindo, Massimo verfasserin aut Larger, Simone verfasserin aut Albanese, Davide verfasserin aut Mescalchin, Enzo verfasserin aut Donati, Claudio verfasserin aut Enthalten in Microbiome London : Biomed Central, 2013 7(2019), 1 vom: 08. Nov. (DE-627)734146140 (DE-600)2697425-3 2049-2618 nnns volume:7 year:2019 number:1 day:08 month:11 https://dx.doi.org/10.1186/s40168-019-0758-7 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 7 2019 1 08 11
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source	Enthalten in Microbiome 7(2019), 1 vom: 08. Nov. volume:7 year:2019 number:1 day:08 month:11
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Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. 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author	Coller, Emanuela
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topic_title	570 ASE Microbiome of vineyard soils is shaped by geography and management
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title	Microbiome of vineyard soils is shaped by geography and management
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title_full	Microbiome of vineyard soils is shaped by geography and management
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author_browse	Coller, Emanuela Cestaro, Alessandro Zanzotti, Roberto Bertoldi, Daniela Pindo, Massimo Larger, Simone Albanese, Davide Mescalchin, Enzo Donati, Claudio
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title_sort	microbiome of vineyard soils is shaped by geography and management
title_auth	Microbiome of vineyard soils is shaped by geography and management
abstract	Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability.
abstractGer	Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability.
abstract_unstemmed	Background Despite their importance as a reservoir of biodiversity, the factors shaping soil microbial communities and the extent by which these are impacted by cultivation are still poorly understood. Using 16S rRNA gene and ITS sequencing, we characterized the soil microbiota of vineyards and of neighboring permanent grassland soils in the Italian province of Trentino, and correlated their structure and composition to location, chemical properties of the soil, and land management. Results Bacterial communities had a core of conserved taxa accounting for more than 60% of the reads of each sample, that was influenced both by geography and cultivation. The core fungal microbiota was much smaller and dominated by geography alone. Cultivation altered the structure and composition of the soil microbiota both for bacteria and fungi, with site-specific effects on their diversity. The diversity of bacterial and fungal communities was generally inversely correlated across locations. We identified several taxa that were impacted by the chemical properties and texture of the soil. Conclusions Our results highlight the different responses of bacterial and fungal communities to environmental factors and highlight the need to characterize both components of the soil microbiota to fully understand the factors that drive their variability.
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title_short	Microbiome of vineyard soils is shaped by geography and management
url	https://dx.doi.org/10.1186/s40168-019-0758-7
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author2	Cestaro, Alessandro Zanzotti, Roberto Bertoldi, Daniela Pindo, Massimo Larger, Simone Albanese, Davide Mescalchin, Enzo Donati, Claudio
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up_date	2024-07-03T17:45:26.006Z
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