REPIC: a database for exploring the N6-methyladenosine methylome

Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Liu, Shun [verfasserIn] Zhu, Allen [verfasserIn] He, Chuan [verfasserIn] Chen, Mengjie [verfasserIn]

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2020

Schlagwörter:	m A modification Database Tissue specificity Genome browser

Übergeordnetes Werk:	Enthalten in: Genome biology - London : BioMed Central, 2000, 21(2020), 1 vom: 28. Apr.
Übergeordnetes Werk:	volume:21 ; year:2020 ; number:1 ; day:28 ; month:04

Links:	Volltext

DOI / URN:	10.1186/s13059-020-02012-4

Katalog-ID:	SPR039551172

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520			\|a Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic.
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allfields	10.1186/s13059-020-02012-4 doi (DE-627)SPR039551172 (SPR)s13059-020-02012-4-e DE-627 ger DE-627 rakwb eng 570 ASE 42.13 bkl 42.20 bkl Liu, Shun verfasserin aut REPIC: a database for exploring the N6-methyladenosine methylome 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic. m (dpeaa)DE-He213 A modification (dpeaa)DE-He213 Database (dpeaa)DE-He213 Tissue specificity (dpeaa)DE-He213 Genome browser (dpeaa)DE-He213 Zhu, Allen verfasserin aut He, Chuan verfasserin aut Chen, Mengjie verfasserin aut Enthalten in Genome biology London : BioMed Central, 2000 21(2020), 1 vom: 28. Apr. (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:21 year:2020 number:1 day:28 month:04 https://dx.doi.org/10.1186/s13059-020-02012-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 42.13 ASE 42.20 ASE AR 21 2020 1 28 04
spelling	10.1186/s13059-020-02012-4 doi (DE-627)SPR039551172 (SPR)s13059-020-02012-4-e DE-627 ger DE-627 rakwb eng 570 ASE 42.13 bkl 42.20 bkl Liu, Shun verfasserin aut REPIC: a database for exploring the N6-methyladenosine methylome 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic. m (dpeaa)DE-He213 A modification (dpeaa)DE-He213 Database (dpeaa)DE-He213 Tissue specificity (dpeaa)DE-He213 Genome browser (dpeaa)DE-He213 Zhu, Allen verfasserin aut He, Chuan verfasserin aut Chen, Mengjie verfasserin aut Enthalten in Genome biology London : BioMed Central, 2000 21(2020), 1 vom: 28. Apr. (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:21 year:2020 number:1 day:28 month:04 https://dx.doi.org/10.1186/s13059-020-02012-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 42.13 ASE 42.20 ASE AR 21 2020 1 28 04
allfields_unstemmed	10.1186/s13059-020-02012-4 doi (DE-627)SPR039551172 (SPR)s13059-020-02012-4-e DE-627 ger DE-627 rakwb eng 570 ASE 42.13 bkl 42.20 bkl Liu, Shun verfasserin aut REPIC: a database for exploring the N6-methyladenosine methylome 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic. m (dpeaa)DE-He213 A modification (dpeaa)DE-He213 Database (dpeaa)DE-He213 Tissue specificity (dpeaa)DE-He213 Genome browser (dpeaa)DE-He213 Zhu, Allen verfasserin aut He, Chuan verfasserin aut Chen, Mengjie verfasserin aut Enthalten in Genome biology London : BioMed Central, 2000 21(2020), 1 vom: 28. Apr. (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:21 year:2020 number:1 day:28 month:04 https://dx.doi.org/10.1186/s13059-020-02012-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 42.13 ASE 42.20 ASE AR 21 2020 1 28 04
allfieldsGer	10.1186/s13059-020-02012-4 doi (DE-627)SPR039551172 (SPR)s13059-020-02012-4-e DE-627 ger DE-627 rakwb eng 570 ASE 42.13 bkl 42.20 bkl Liu, Shun verfasserin aut REPIC: a database for exploring the N6-methyladenosine methylome 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic. m (dpeaa)DE-He213 A modification (dpeaa)DE-He213 Database (dpeaa)DE-He213 Tissue specificity (dpeaa)DE-He213 Genome browser (dpeaa)DE-He213 Zhu, Allen verfasserin aut He, Chuan verfasserin aut Chen, Mengjie verfasserin aut Enthalten in Genome biology London : BioMed Central, 2000 21(2020), 1 vom: 28. Apr. (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:21 year:2020 number:1 day:28 month:04 https://dx.doi.org/10.1186/s13059-020-02012-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 42.13 ASE 42.20 ASE AR 21 2020 1 28 04
allfieldsSound	10.1186/s13059-020-02012-4 doi (DE-627)SPR039551172 (SPR)s13059-020-02012-4-e DE-627 ger DE-627 rakwb eng 570 ASE 42.13 bkl 42.20 bkl Liu, Shun verfasserin aut REPIC: a database for exploring the N6-methyladenosine methylome 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic. m (dpeaa)DE-He213 A modification (dpeaa)DE-He213 Database (dpeaa)DE-He213 Tissue specificity (dpeaa)DE-He213 Genome browser (dpeaa)DE-He213 Zhu, Allen verfasserin aut He, Chuan verfasserin aut Chen, Mengjie verfasserin aut Enthalten in Genome biology London : BioMed Central, 2000 21(2020), 1 vom: 28. Apr. (DE-627)326173617 (DE-600)2040529-7 1474-760X nnns volume:21 year:2020 number:1 day:28 month:04 https://dx.doi.org/10.1186/s13059-020-02012-4 kostenfrei Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2003 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 42.13 ASE 42.20 ASE AR 21 2020 1 28 04
language	English
source	Enthalten in Genome biology 21(2020), 1 vom: 28. Apr. volume:21 year:2020 number:1 day:28 month:04
sourceStr	Enthalten in Genome biology 21(2020), 1 vom: 28. Apr. volume:21 year:2020 number:1 day:28 month:04
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authorswithroles_txt_mv	Liu, Shun @@aut@@ Zhu, Allen @@aut@@ He, Chuan @@aut@@ Chen, Mengjie @@aut@@
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title	REPIC: a database for exploring the N6-methyladenosine methylome
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title_full	REPIC: a database for exploring the N6-methyladenosine methylome
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title_sort	repic: a database for exploring the n6-methyladenosine methylome
title_auth	REPIC: a database for exploring the N6-methyladenosine methylome
abstract	Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic.
abstractGer	Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic.
abstract_unstemmed	Abstract The REPIC (RNA EPItranscriptome Collection) database records about 10 million peaks called from publicly available $ m^{6} $A-seq and MeRIP-seq data using our unified pipeline. These data were collected from 672 samples of 49 studies, covering 61 cell lines or tissues in 11 organisms. REPIC allows users to query N6-methyladenosine ($ m^{6} $A) modification sites by specific cell lines or tissue types. In addition, it integrates $ m^{6} $A/MeRIP-seq data with 1418 histone ChIP-seq and 118 DNase-seq data tracks from the ENCODE project in a modern genome browser to present a comprehensive atlas of $ m^{6} $A methylation sites, histone modification sites, and chromatin accessibility regions. REPIC is accessible at https://repicmod.uchicago.edu/repic.
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title_short	REPIC: a database for exploring the N6-methyladenosine methylome
url	https://dx.doi.org/10.1186/s13059-020-02012-4
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score	7.400177

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REPIC: a database for exploring the N6-methyladenosine methylome

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