Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea
Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) m...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Catanese, Gaetano [verfasserIn] Trotta, Jean Remi [verfasserIn] Iriondo, Mikel [verfasserIn] Grau, Antoni Maria [verfasserIn] Estonba, Andone [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2020 |
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| Schlagwörter: |
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| Übergeordnetes Werk: |
Enthalten in: Conservation genetics resources - Dordrecht : Springer Netherlands, 2009, 13(2020), 1 vom: 03. Nov., Seite 21-25 |
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| Übergeordnetes Werk: |
volume:13 ; year:2020 ; number:1 ; day:03 ; month:11 ; pages:21-25 |
| Links: |
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| DOI / URN: |
10.1007/s12686-020-01178-0 |
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| Katalog-ID: |
SPR043329810 |
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| 100 | 1 | |a Catanese, Gaetano |e verfasserin |4 aut | |
| 245 | 1 | 0 | |a Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
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| 520 | |a Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. | ||
| 650 | 4 | |a Conservation genetics |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Genotyping-by-sequencing |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a Single nucleotide polymorphism |7 (dpeaa)DE-He213 | |
| 650 | 4 | |a SNP selection |7 (dpeaa)DE-He213 | |
| 700 | 1 | |a Trotta, Jean Remi |e verfasserin |4 aut | |
| 700 | 1 | |a Iriondo, Mikel |e verfasserin |4 aut | |
| 700 | 1 | |a Grau, Antoni Maria |e verfasserin |4 aut | |
| 700 | 1 | |a Estonba, Andone |e verfasserin |4 aut | |
| 773 | 0 | 8 | |i Enthalten in |t Conservation genetics resources |d Dordrecht : Springer Netherlands, 2009 |g 13(2020), 1 vom: 03. Nov., Seite 21-25 |w (DE-627)606030891 |w (DE-600)2508018-0 |x 1877-7260 |7 nnns |
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| 912 | |a GBV_ILN_370 | ||
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| 912 | |a GBV_ILN_2014 | ||
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| 912 | |a GBV_ILN_2021 | ||
| 912 | |a GBV_ILN_2025 | ||
| 912 | |a GBV_ILN_2026 | ||
| 912 | |a GBV_ILN_2027 | ||
| 912 | |a GBV_ILN_2031 | ||
| 912 | |a GBV_ILN_2034 | ||
| 912 | |a GBV_ILN_2037 | ||
| 912 | |a GBV_ILN_2038 | ||
| 912 | |a GBV_ILN_2039 | ||
| 912 | |a GBV_ILN_2044 | ||
| 912 | |a GBV_ILN_2048 | ||
| 912 | |a GBV_ILN_2049 | ||
| 912 | |a GBV_ILN_2050 | ||
| 912 | |a GBV_ILN_2055 | ||
| 912 | |a GBV_ILN_2056 | ||
| 912 | |a GBV_ILN_2057 | ||
| 912 | |a GBV_ILN_2059 | ||
| 912 | |a GBV_ILN_2061 | ||
| 912 | |a GBV_ILN_2064 | ||
| 912 | |a GBV_ILN_2065 | ||
| 912 | |a GBV_ILN_2068 | ||
| 912 | |a GBV_ILN_2088 | ||
| 912 | |a GBV_ILN_2093 | ||
| 912 | |a GBV_ILN_2106 | ||
| 912 | |a GBV_ILN_2107 | ||
| 912 | |a GBV_ILN_2108 | ||
| 912 | |a GBV_ILN_2110 | ||
| 912 | |a GBV_ILN_2111 | ||
| 912 | |a GBV_ILN_2112 | ||
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| 912 | |a GBV_ILN_4306 | ||
| 912 | |a GBV_ILN_4307 | ||
| 912 | |a GBV_ILN_4313 | ||
| 912 | |a GBV_ILN_4322 | ||
| 912 | |a GBV_ILN_4323 | ||
| 912 | |a GBV_ILN_4324 | ||
| 912 | |a GBV_ILN_4325 | ||
| 912 | |a GBV_ILN_4326 | ||
| 912 | |a GBV_ILN_4328 | ||
| 912 | |a GBV_ILN_4333 | ||
| 912 | |a GBV_ILN_4334 | ||
| 912 | |a GBV_ILN_4335 | ||
| 912 | |a GBV_ILN_4336 | ||
| 912 | |a GBV_ILN_4338 | ||
| 912 | |a GBV_ILN_4393 | ||
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10.1007/s12686-020-01178-0 doi (DE-627)SPR043329810 (DE-599)SPRs12686-020-01178-0-e (SPR)s12686-020-01178-0-e DE-627 ger DE-627 rakwb eng 570 610 ASE 44.48 bkl Catanese, Gaetano verfasserin aut Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 Trotta, Jean Remi verfasserin aut Iriondo, Mikel verfasserin aut Grau, Antoni Maria verfasserin aut Estonba, Andone verfasserin aut Enthalten in Conservation genetics resources Dordrecht : Springer Netherlands, 2009 13(2020), 1 vom: 03. Nov., Seite 21-25 (DE-627)606030891 (DE-600)2508018-0 1877-7260 nnns volume:13 year:2020 number:1 day:03 month:11 pages:21-25 https://dx.doi.org/10.1007/s12686-020-01178-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 44.48 ASE AR 13 2020 1 03 11 21-25 |
| spelling |
10.1007/s12686-020-01178-0 doi (DE-627)SPR043329810 (DE-599)SPRs12686-020-01178-0-e (SPR)s12686-020-01178-0-e DE-627 ger DE-627 rakwb eng 570 610 ASE 44.48 bkl Catanese, Gaetano verfasserin aut Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 Trotta, Jean Remi verfasserin aut Iriondo, Mikel verfasserin aut Grau, Antoni Maria verfasserin aut Estonba, Andone verfasserin aut Enthalten in Conservation genetics resources Dordrecht : Springer Netherlands, 2009 13(2020), 1 vom: 03. Nov., Seite 21-25 (DE-627)606030891 (DE-600)2508018-0 1877-7260 nnns volume:13 year:2020 number:1 day:03 month:11 pages:21-25 https://dx.doi.org/10.1007/s12686-020-01178-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 44.48 ASE AR 13 2020 1 03 11 21-25 |
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10.1007/s12686-020-01178-0 doi (DE-627)SPR043329810 (DE-599)SPRs12686-020-01178-0-e (SPR)s12686-020-01178-0-e DE-627 ger DE-627 rakwb eng 570 610 ASE 44.48 bkl Catanese, Gaetano verfasserin aut Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 Trotta, Jean Remi verfasserin aut Iriondo, Mikel verfasserin aut Grau, Antoni Maria verfasserin aut Estonba, Andone verfasserin aut Enthalten in Conservation genetics resources Dordrecht : Springer Netherlands, 2009 13(2020), 1 vom: 03. Nov., Seite 21-25 (DE-627)606030891 (DE-600)2508018-0 1877-7260 nnns volume:13 year:2020 number:1 day:03 month:11 pages:21-25 https://dx.doi.org/10.1007/s12686-020-01178-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 44.48 ASE AR 13 2020 1 03 11 21-25 |
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10.1007/s12686-020-01178-0 doi (DE-627)SPR043329810 (DE-599)SPRs12686-020-01178-0-e (SPR)s12686-020-01178-0-e DE-627 ger DE-627 rakwb eng 570 610 ASE 44.48 bkl Catanese, Gaetano verfasserin aut Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 Trotta, Jean Remi verfasserin aut Iriondo, Mikel verfasserin aut Grau, Antoni Maria verfasserin aut Estonba, Andone verfasserin aut Enthalten in Conservation genetics resources Dordrecht : Springer Netherlands, 2009 13(2020), 1 vom: 03. Nov., Seite 21-25 (DE-627)606030891 (DE-600)2508018-0 1877-7260 nnns volume:13 year:2020 number:1 day:03 month:11 pages:21-25 https://dx.doi.org/10.1007/s12686-020-01178-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 44.48 ASE AR 13 2020 1 03 11 21-25 |
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10.1007/s12686-020-01178-0 doi (DE-627)SPR043329810 (DE-599)SPRs12686-020-01178-0-e (SPR)s12686-020-01178-0-e DE-627 ger DE-627 rakwb eng 570 610 ASE 44.48 bkl Catanese, Gaetano verfasserin aut Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea 2020 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 Trotta, Jean Remi verfasserin aut Iriondo, Mikel verfasserin aut Grau, Antoni Maria verfasserin aut Estonba, Andone verfasserin aut Enthalten in Conservation genetics resources Dordrecht : Springer Netherlands, 2009 13(2020), 1 vom: 03. Nov., Seite 21-25 (DE-627)606030891 (DE-600)2508018-0 1877-7260 nnns volume:13 year:2020 number:1 day:03 month:11 pages:21-25 https://dx.doi.org/10.1007/s12686-020-01178-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 44.48 ASE AR 13 2020 1 03 11 21-25 |
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Catanese, Gaetano @@aut@@ Trotta, Jean Remi @@aut@@ Iriondo, Mikel @@aut@@ Grau, Antoni Maria @@aut@@ Estonba, Andone @@aut@@ |
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Catanese, Gaetano |
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Catanese, Gaetano ddc 570 bkl 44.48 misc Conservation genetics misc Genotyping-by-sequencing misc Single nucleotide polymorphism misc SNP selection Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
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570 610 ASE 44.48 bkl Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea Conservation genetics (dpeaa)DE-He213 Genotyping-by-sequencing (dpeaa)DE-He213 Single nucleotide polymorphism (dpeaa)DE-He213 SNP selection (dpeaa)DE-He213 |
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ddc 570 bkl 44.48 misc Conservation genetics misc Genotyping-by-sequencing misc Single nucleotide polymorphism misc SNP selection |
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Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
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Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
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Catanese, Gaetano Trotta, Jean Remi Iriondo, Mikel Grau, Antoni Maria Estonba, Andone |
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discovery of snp markers of red shrimp aristeus antennatus for population structure in western mediterranean sea |
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Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
| abstract |
Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. |
| abstractGer |
Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. |
| abstract_unstemmed |
Abstract Aristeus antennatus is one of the most exploited and economically important resource for fisheries in the Western and Central Mediterranean Sea displaying low population differentiation with mitochondrial and microsatellite markers. The recent development of Genotyping-by-Sequencing (GBS) methods may contribute to the discovery of SNPs and the assessment of genetic differences between populations of this species for fisheries management. Using samples from four geographical sites in Western Mediterranean and Eastern Atlantic, 115,071 putative SNPs were detected. After the stringent quality control measures and the filtering procedure, 232 SNP loci were discovered. Finally, we selected 80 SNP subset panel for Fluidigm Dynamic array application. The results showed significant differentiation among populations from the four sampling sites. Population assignment power and patterns of population differentiation were comparable between the two SNP panels. These markers represent a useful tool for future genetic application of A. antennatus populations. |
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1 |
| title_short |
Discovery of SNP markers of red shrimp Aristeus antennatus for population structure in Western Mediterranean Sea |
| url |
https://dx.doi.org/10.1007/s12686-020-01178-0 |
| remote_bool |
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| author2 |
Trotta, Jean Remi Iriondo, Mikel Grau, Antoni Maria Estonba, Andone |
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Trotta, Jean Remi Iriondo, Mikel Grau, Antoni Maria Estonba, Andone |
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606030891 |
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| doi_str |
10.1007/s12686-020-01178-0 |
| up_date |
2024-07-03T17:58:33.571Z |
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1803581667223273472 |
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| score |
7.4011784 |