Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India
Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
G., Uday [verfasserIn] E, Manjunatha S. [verfasserIn] K, Priyanka [verfasserIn] Hegde, Gurudatt M. [verfasserIn] Biradar, Suma [verfasserIn] Moger, Narayan B. [verfasserIn] V., Patil P. [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2021 |
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| Schlagwörter: |
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| Anmerkung: |
© Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 |
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| Übergeordnetes Werk: |
Enthalten in: Journal of plant pathology - [Cham] : Springer International Publishing, 1997, 103(2021), 3 vom: 09. Juni, Seite 991-995 |
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| Übergeordnetes Werk: |
volume:103 ; year:2021 ; number:3 ; day:09 ; month:06 ; pages:991-995 |
| Links: |
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| DOI / URN: |
10.1007/s42161-021-00879-1 |
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SPR04484851X |
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| 245 | 1 | 0 | |a Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
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| 520 | |a Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. | ||
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10.1007/s42161-021-00879-1 doi (DE-627)SPR04484851X (SPR)s42161-021-00879-1-e DE-627 ger DE-627 rakwb eng 630 580 ASE 630 580 ASE 48.54 bkl G., Uday verfasserin aut Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 E, Manjunatha S. verfasserin aut K, Priyanka verfasserin aut Hegde, Gurudatt M. verfasserin aut Biradar, Suma verfasserin aut Moger, Narayan B. verfasserin aut V., Patil P. verfasserin aut Enthalten in Journal of plant pathology [Cham] : Springer International Publishing, 1997 103(2021), 3 vom: 09. Juni, Seite 991-995 (DE-627)504102400 (DE-600)2212051-8 2239-7264 nnns volume:103 year:2021 number:3 day:09 month:06 pages:991-995 https://dx.doi.org/10.1007/s42161-021-00879-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 48.54 ASE AR 103 2021 3 09 06 991-995 |
| spelling |
10.1007/s42161-021-00879-1 doi (DE-627)SPR04484851X (SPR)s42161-021-00879-1-e DE-627 ger DE-627 rakwb eng 630 580 ASE 630 580 ASE 48.54 bkl G., Uday verfasserin aut Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 E, Manjunatha S. verfasserin aut K, Priyanka verfasserin aut Hegde, Gurudatt M. verfasserin aut Biradar, Suma verfasserin aut Moger, Narayan B. verfasserin aut V., Patil P. verfasserin aut Enthalten in Journal of plant pathology [Cham] : Springer International Publishing, 1997 103(2021), 3 vom: 09. Juni, Seite 991-995 (DE-627)504102400 (DE-600)2212051-8 2239-7264 nnns volume:103 year:2021 number:3 day:09 month:06 pages:991-995 https://dx.doi.org/10.1007/s42161-021-00879-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 48.54 ASE AR 103 2021 3 09 06 991-995 |
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10.1007/s42161-021-00879-1 doi (DE-627)SPR04484851X (SPR)s42161-021-00879-1-e DE-627 ger DE-627 rakwb eng 630 580 ASE 630 580 ASE 48.54 bkl G., Uday verfasserin aut Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 E, Manjunatha S. verfasserin aut K, Priyanka verfasserin aut Hegde, Gurudatt M. verfasserin aut Biradar, Suma verfasserin aut Moger, Narayan B. verfasserin aut V., Patil P. verfasserin aut Enthalten in Journal of plant pathology [Cham] : Springer International Publishing, 1997 103(2021), 3 vom: 09. Juni, Seite 991-995 (DE-627)504102400 (DE-600)2212051-8 2239-7264 nnns volume:103 year:2021 number:3 day:09 month:06 pages:991-995 https://dx.doi.org/10.1007/s42161-021-00879-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 48.54 ASE AR 103 2021 3 09 06 991-995 |
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10.1007/s42161-021-00879-1 doi (DE-627)SPR04484851X (SPR)s42161-021-00879-1-e DE-627 ger DE-627 rakwb eng 630 580 ASE 630 580 ASE 48.54 bkl G., Uday verfasserin aut Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 E, Manjunatha S. verfasserin aut K, Priyanka verfasserin aut Hegde, Gurudatt M. verfasserin aut Biradar, Suma verfasserin aut Moger, Narayan B. verfasserin aut V., Patil P. verfasserin aut Enthalten in Journal of plant pathology [Cham] : Springer International Publishing, 1997 103(2021), 3 vom: 09. Juni, Seite 991-995 (DE-627)504102400 (DE-600)2212051-8 2239-7264 nnns volume:103 year:2021 number:3 day:09 month:06 pages:991-995 https://dx.doi.org/10.1007/s42161-021-00879-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 48.54 ASE AR 103 2021 3 09 06 991-995 |
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10.1007/s42161-021-00879-1 doi (DE-627)SPR04484851X (SPR)s42161-021-00879-1-e DE-627 ger DE-627 rakwb eng 630 580 ASE 630 580 ASE 48.54 bkl G., Uday verfasserin aut Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India 2021 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 E, Manjunatha S. verfasserin aut K, Priyanka verfasserin aut Hegde, Gurudatt M. verfasserin aut Biradar, Suma verfasserin aut Moger, Narayan B. verfasserin aut V., Patil P. verfasserin aut Enthalten in Journal of plant pathology [Cham] : Springer International Publishing, 1997 103(2021), 3 vom: 09. Juni, Seite 991-995 (DE-627)504102400 (DE-600)2212051-8 2239-7264 nnns volume:103 year:2021 number:3 day:09 month:06 pages:991-995 https://dx.doi.org/10.1007/s42161-021-00879-1 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER SSG-OLC-PHA GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_266 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 48.54 ASE AR 103 2021 3 09 06 991-995 |
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In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. 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|
| author |
G., Uday |
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G., Uday ddc 630 bkl 48.54 misc Wheat misc Foot rot misc Fungi misc ITS misc Detection Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
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2239-7264 |
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630 580 ASE 48.54 bkl Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India Wheat (dpeaa)DE-He213 Foot rot (dpeaa)DE-He213 Fungi (dpeaa)DE-He213 ITS (dpeaa)DE-He213 Detection (dpeaa)DE-He213 |
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ddc 630 bkl 48.54 misc Wheat misc Foot rot misc Fungi misc ITS misc Detection |
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ddc 630 bkl 48.54 misc Wheat misc Foot rot misc Fungi misc ITS misc Detection |
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ddc 630 bkl 48.54 misc Wheat misc Foot rot misc Fungi misc ITS misc Detection |
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Elektronische Aufsätze Aufsätze Elektronische Ressource |
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630 - Agriculture 580 - Plants (Botany) |
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Journal of plant pathology |
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Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
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(DE-627)SPR04484851X (SPR)s42161-021-00879-1-e |
| title_full |
Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
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G., Uday |
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Journal of plant pathology |
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G., Uday E, Manjunatha S. K, Priyanka Hegde, Gurudatt M. Biradar, Suma Moger, Narayan B. V., Patil P. |
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molecular detection and characterization of sclerotium rolfsii sacc. causing wheat foot rot isolated from northern karnataka, india |
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Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
| abstract |
Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 |
| abstractGer |
Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 |
| abstract_unstemmed |
Abstract Wheat foot rot disease is caused by Sclerotium rolfsii Sacc., a soil-inhabiting pathogen with a broad host range. In wheat, this pathogen causes blighted appearance and death. Studies on this organism have been performed mainly on morphological, physiological and pathogenic variability, but molecular diversity analysis based on the internal transcribed spacer (ITS) region of isolates collected from different wheat growing areas of Karnataka has not been attempted. ITSs are widely used for molecular detection and species identification. In this study, the DNA sequence of the region amplified by the ITS5 and ITS4 primer pair was used to detect five isolates of S. rolfsii collected from different agro-climatic zones of Karnataka. BLAST analysis of the aligned ITS5/4 sequences of the five isolates showed sequence homology with other Athelia rolfsii (teleomorph of S. rolfsii) sequences reported on other crops, while no previous sequences have been reported from wheat. Phylogenetic relationships across these isolates were analyzed and showed significant variability between the isolates by grouping them into two clades. To our knowledge, this is the first report of a molecular sequence of Sclerotiumrolfsii infecting wheat. © Società Italiana di Patologia Vegetale (S.I.Pa.V.) 2021 |
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Molecular detection and characterization of Sclerotium rolfsii Sacc. causing wheat foot rot isolated from northern Karnataka, India |
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E, Manjunatha S. K, Priyanka Hegde, Gurudatt M. Biradar, Suma Moger, Narayan B. V., Patil P. |
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| score |
7.3997183 |