Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression
Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in...
Ausführliche Beschreibung
Autor*in: |
Ahmad, Aqeel [verfasserIn] |
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Format: |
E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2022 |
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Schlagwörter: |
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Anmerkung: |
© Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 |
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Übergeordnetes Werk: |
Enthalten in: European journal of plant pathology - Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895, 162(2022), 4 vom: 21. Jan., Seite 869-884 |
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Übergeordnetes Werk: |
volume:162 ; year:2022 ; number:4 ; day:21 ; month:01 ; pages:869-884 |
Links: |
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DOI / URN: |
10.1007/s10658-021-02443-0 |
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Katalog-ID: |
SPR046501649 |
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100 | 1 | |a Ahmad, Aqeel |e verfasserin |0 (orcid)0000-0001-9097-2628 |4 aut | |
245 | 1 | 0 | |a Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
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520 | |a Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. | ||
650 | 4 | |a Biogenesis |7 (dpeaa)DE-He213 | |
650 | 4 | |a Biological regulation |7 (dpeaa)DE-He213 | |
650 | 4 | |a Pathogenesis-related |7 (dpeaa)DE-He213 | |
650 | 4 | |a RNA-sequencing |7 (dpeaa)DE-He213 | |
650 | 4 | |a Rhythmic process |7 (dpeaa)DE-He213 | |
650 | 4 | |a Transcription factor |7 (dpeaa)DE-He213 | |
650 | 4 | |a Transporter activity |7 (dpeaa)DE-He213 | |
700 | 1 | |a Wang, Rui |4 aut | |
700 | 1 | |a Mubeen, Samavia |4 aut | |
700 | 1 | |a Akram, Waheed |4 aut | |
700 | 1 | |a Hu, Du |4 aut | |
700 | 1 | |a Yasin, Nasim Ahmad |4 aut | |
700 | 1 | |a Khan, Moman |4 aut | |
700 | 1 | |a Wu, Tingquan |4 aut | |
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10.1007/s10658-021-02443-0 doi (DE-627)SPR046501649 (SPR)s10658-021-02443-0-e DE-627 ger DE-627 rakwb eng Ahmad, Aqeel verfasserin (orcid)0000-0001-9097-2628 aut Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 Wang, Rui aut Mubeen, Samavia aut Akram, Waheed aut Hu, Du aut Yasin, Nasim Ahmad aut Khan, Moman aut Wu, Tingquan aut Enthalten in European journal of plant pathology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895 162(2022), 4 vom: 21. Jan., Seite 869-884 (DE-627)27042976X (DE-600)1477679-0 1573-8469 nnns volume:162 year:2022 number:4 day:21 month:01 pages:869-884 https://dx.doi.org/10.1007/s10658-021-02443-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 162 2022 4 21 01 869-884 |
spelling |
10.1007/s10658-021-02443-0 doi (DE-627)SPR046501649 (SPR)s10658-021-02443-0-e DE-627 ger DE-627 rakwb eng Ahmad, Aqeel verfasserin (orcid)0000-0001-9097-2628 aut Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 Wang, Rui aut Mubeen, Samavia aut Akram, Waheed aut Hu, Du aut Yasin, Nasim Ahmad aut Khan, Moman aut Wu, Tingquan aut Enthalten in European journal of plant pathology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895 162(2022), 4 vom: 21. Jan., Seite 869-884 (DE-627)27042976X (DE-600)1477679-0 1573-8469 nnns volume:162 year:2022 number:4 day:21 month:01 pages:869-884 https://dx.doi.org/10.1007/s10658-021-02443-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 162 2022 4 21 01 869-884 |
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10.1007/s10658-021-02443-0 doi (DE-627)SPR046501649 (SPR)s10658-021-02443-0-e DE-627 ger DE-627 rakwb eng Ahmad, Aqeel verfasserin (orcid)0000-0001-9097-2628 aut Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 Wang, Rui aut Mubeen, Samavia aut Akram, Waheed aut Hu, Du aut Yasin, Nasim Ahmad aut Khan, Moman aut Wu, Tingquan aut Enthalten in European journal of plant pathology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895 162(2022), 4 vom: 21. Jan., Seite 869-884 (DE-627)27042976X (DE-600)1477679-0 1573-8469 nnns volume:162 year:2022 number:4 day:21 month:01 pages:869-884 https://dx.doi.org/10.1007/s10658-021-02443-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 162 2022 4 21 01 869-884 |
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10.1007/s10658-021-02443-0 doi (DE-627)SPR046501649 (SPR)s10658-021-02443-0-e DE-627 ger DE-627 rakwb eng Ahmad, Aqeel verfasserin (orcid)0000-0001-9097-2628 aut Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 Wang, Rui aut Mubeen, Samavia aut Akram, Waheed aut Hu, Du aut Yasin, Nasim Ahmad aut Khan, Moman aut Wu, Tingquan aut Enthalten in European journal of plant pathology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895 162(2022), 4 vom: 21. Jan., Seite 869-884 (DE-627)27042976X (DE-600)1477679-0 1573-8469 nnns volume:162 year:2022 number:4 day:21 month:01 pages:869-884 https://dx.doi.org/10.1007/s10658-021-02443-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 162 2022 4 21 01 869-884 |
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10.1007/s10658-021-02443-0 doi (DE-627)SPR046501649 (SPR)s10658-021-02443-0-e DE-627 ger DE-627 rakwb eng Ahmad, Aqeel verfasserin (orcid)0000-0001-9097-2628 aut Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 Wang, Rui aut Mubeen, Samavia aut Akram, Waheed aut Hu, Du aut Yasin, Nasim Ahmad aut Khan, Moman aut Wu, Tingquan aut Enthalten in European journal of plant pathology Dordrecht [u.a.] : Springer Science + Business Media B.V, 1895 162(2022), 4 vom: 21. Jan., Seite 869-884 (DE-627)27042976X (DE-600)1477679-0 1573-8469 nnns volume:162 year:2022 number:4 day:21 month:01 pages:869-884 https://dx.doi.org/10.1007/s10658-021-02443-0 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 162 2022 4 21 01 869-884 |
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Enthalten in European journal of plant pathology 162(2022), 4 vom: 21. Jan., Seite 869-884 volume:162 year:2022 number:4 day:21 month:01 pages:869-884 |
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Ahmad, Aqeel @@aut@@ Wang, Rui @@aut@@ Mubeen, Samavia @@aut@@ Akram, Waheed @@aut@@ Hu, Du @@aut@@ Yasin, Nasim Ahmad @@aut@@ Khan, Moman @@aut@@ Wu, Tingquan @@aut@@ |
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The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. 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Ahmad, Aqeel |
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Ahmad, Aqeel misc Biogenesis misc Biological regulation misc Pathogenesis-related misc RNA-sequencing misc Rhythmic process misc Transcription factor misc Transporter activity Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
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Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression Biogenesis (dpeaa)DE-He213 Biological regulation (dpeaa)DE-He213 Pathogenesis-related (dpeaa)DE-He213 RNA-sequencing (dpeaa)DE-He213 Rhythmic process (dpeaa)DE-He213 Transcription factor (dpeaa)DE-He213 Transporter activity (dpeaa)DE-He213 |
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Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
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Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
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comparative transcriptomics reveals defense acquisition in brassica rapa by synchronizing brassinosteroids metabolism with pr1 expression |
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Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
abstract |
Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 |
abstractGer |
Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 |
abstract_unstemmed |
Abstract The current investigation reveals the molecular basis of Brassica rapa resistance against Hyaloperonospora brassicae based on RNA sequencing. The resistant line RB5 remained symptomless even after three days of post-inoculation. There was the maximum number of down-regulated genes (5156) in S1 after 96 h post-inoculation. Resistant line RB5 had 392 upregulated genes related to metabolic processes at 0 h post-inoculation. The comparison of both the lines after 96 h showed a slower but steady upregulation in the gene expression in RB5 (less than 3000 genes). The brassinosteroid (BR) biosynthesis pathway showed a down-regulation of its genes with the maximum down-regulation of BSK. Studying the calcium ions chain revealed 72% upregulated genes. However, the concluding physiological response resulted from the upregulation of PR genes (usually more than 2 times upregulation in most cases). Among PR genes, the loci Bra003774 and Bra025730 depicted an upregulation of more than two times, consequently supporting the elevated expression of WRKY22 and PR1. However, due to the end position of PR1 in defense responses, it was annotated as a delayed response factor to the attacking pathogen. MKS1 pathway was proved less sensitive toward the pathogenic attack; however, MEKK2 metabolism was proved more sensitive. After PR1, Zinc finger protein metabolism was the second highly activated process in the Brassica cells with the elevated expression of 42% genes. The study adds precious information about the host–pathogen relationship and could assist plant protection and food security programs. © Koninklijke Nederlandse Planteziektenkundige Vereniging 2021 |
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container_issue |
4 |
title_short |
Comparative transcriptomics reveals defense acquisition in Brassica rapa by synchronizing brassinosteroids metabolism with PR1 expression |
url |
https://dx.doi.org/10.1007/s10658-021-02443-0 |
remote_bool |
true |
author2 |
Wang, Rui Mubeen, Samavia Akram, Waheed Hu, Du Yasin, Nasim Ahmad Khan, Moman Wu, Tingquan |
author2Str |
Wang, Rui Mubeen, Samavia Akram, Waheed Hu, Du Yasin, Nasim Ahmad Khan, Moman Wu, Tingquan |
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doi_str |
10.1007/s10658-021-02443-0 |
up_date |
2024-07-03T22:55:31.846Z |
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score |
7.3993263 |