Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant

Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was low...
Ausführliche Beschreibung

Gespeichert in:

Autor*in:	Zhang, Xiaoying [verfasserIn] Ruan, Ruoxin Zhao, Fukang Li, Chunnan Fu, Qiaojuan

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2022

Schlagwörter:	Leaf color Transcriptome Different expressed gene

Anmerkung:	© The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Übergeordnetes Werk:	Enthalten in: Acta physiologiae plantarum - Berlin : Springer, 1997, 45(2022), 1 vom: 14. Nov.
Übergeordnetes Werk:	volume:45 ; year:2022 ; number:1 ; day:14 ; month:11

Links:	Volltext

DOI / URN:	10.1007/s11738-022-03471-x

Katalog-ID:	SPR048623318

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520			\|a Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids.
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allfields	10.1007/s11738-022-03471-x doi (DE-627)SPR048623318 (SPR)s11738-022-03471-x-e DE-627 ger DE-627 rakwb eng Zhang, Xiaoying verfasserin (orcid)0000-0002-6409-6430 aut Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213 Ruan, Ruoxin aut Zhao, Fukang aut Li, Chunnan aut Fu, Qiaojuan aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 45(2022), 1 vom: 14. Nov. (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:45 year:2022 number:1 day:14 month:11 https://dx.doi.org/10.1007/s11738-022-03471-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 45 2022 1 14 11
spelling	10.1007/s11738-022-03471-x doi (DE-627)SPR048623318 (SPR)s11738-022-03471-x-e DE-627 ger DE-627 rakwb eng Zhang, Xiaoying verfasserin (orcid)0000-0002-6409-6430 aut Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213 Ruan, Ruoxin aut Zhao, Fukang aut Li, Chunnan aut Fu, Qiaojuan aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 45(2022), 1 vom: 14. Nov. (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:45 year:2022 number:1 day:14 month:11 https://dx.doi.org/10.1007/s11738-022-03471-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 45 2022 1 14 11
allfields_unstemmed	10.1007/s11738-022-03471-x doi (DE-627)SPR048623318 (SPR)s11738-022-03471-x-e DE-627 ger DE-627 rakwb eng Zhang, Xiaoying verfasserin (orcid)0000-0002-6409-6430 aut Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213 Ruan, Ruoxin aut Zhao, Fukang aut Li, Chunnan aut Fu, Qiaojuan aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 45(2022), 1 vom: 14. Nov. (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:45 year:2022 number:1 day:14 month:11 https://dx.doi.org/10.1007/s11738-022-03471-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 45 2022 1 14 11
allfieldsGer	10.1007/s11738-022-03471-x doi (DE-627)SPR048623318 (SPR)s11738-022-03471-x-e DE-627 ger DE-627 rakwb eng Zhang, Xiaoying verfasserin (orcid)0000-0002-6409-6430 aut Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213 Ruan, Ruoxin aut Zhao, Fukang aut Li, Chunnan aut Fu, Qiaojuan aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 45(2022), 1 vom: 14. Nov. (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:45 year:2022 number:1 day:14 month:11 https://dx.doi.org/10.1007/s11738-022-03471-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 45 2022 1 14 11
allfieldsSound	10.1007/s11738-022-03471-x doi (DE-627)SPR048623318 (SPR)s11738-022-03471-x-e DE-627 ger DE-627 rakwb eng Zhang, Xiaoying verfasserin (orcid)0000-0002-6409-6430 aut Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant 2022 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213 Ruan, Ruoxin aut Zhao, Fukang aut Li, Chunnan aut Fu, Qiaojuan aut Enthalten in Acta physiologiae plantarum Berlin : Springer, 1997 45(2022), 1 vom: 14. Nov. (DE-627)516024906 (DE-600)2245807-4 1861-1664 nnns volume:45 year:2022 number:1 day:14 month:11 https://dx.doi.org/10.1007/s11738-022-03471-x lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 45 2022 1 14 11
language	English
source	Enthalten in Acta physiologiae plantarum 45(2022), 1 vom: 14. Nov. volume:45 year:2022 number:1 day:14 month:11
sourceStr	Enthalten in Acta physiologiae plantarum 45(2022), 1 vom: 14. Nov. volume:45 year:2022 number:1 day:14 month:11
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Leaf color Transcriptome Different expressed gene
isfreeaccess_bool	false
container_title	Acta physiologiae plantarum
authorswithroles_txt_mv	Zhang, Xiaoying @@aut@@ Ruan, Ruoxin @@aut@@ Zhao, Fukang @@aut@@ Li, Chunnan @@aut@@ Fu, Qiaojuan @@aut@@
publishDateDaySort_date	2022-11-14T00:00:00Z
hierarchy_top_id	516024906
id	SPR048623318
language_de	englisch
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author	Zhang, Xiaoying
spellingShingle	Zhang, Xiaoying misc Leaf color misc Transcriptome misc Different expressed gene Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant
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topic_title	Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant Leaf color (dpeaa)DE-He213 Transcriptome (dpeaa)DE-He213 Different expressed gene (dpeaa)DE-He213
topic	misc Leaf color misc Transcriptome misc Different expressed gene
topic_unstemmed	misc Leaf color misc Transcriptome misc Different expressed gene
topic_browse	misc Leaf color misc Transcriptome misc Different expressed gene
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title	Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant
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title_full	Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant
author_sort	Zhang, Xiaoying
journal	Acta physiologiae plantarum
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author_browse	Zhang, Xiaoying Ruan, Ruoxin Zhao, Fukang Li, Chunnan Fu, Qiaojuan
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title_sort	comprehensive transcriptome analysis discovers genes related to leaf color in cymbidium ‘sakura’ etiolated mutant
title_auth	Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant
abstract	Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
abstractGer	Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
abstract_unstemmed	Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids. © The Author(s) under exclusive licence to Franciszek Górski Institute of Plant Physiology, Polish Academy of Sciences, Kraków 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
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title_short	Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant
url	https://dx.doi.org/10.1007/s11738-022-03471-x
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author2	Ruan, Ruoxin Zhao, Fukang Li, Chunnan Fu, Qiaojuan
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up_date	2024-07-03T20:24:56.970Z
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Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract The orchids Cymbidium ‘Sakura’ (CyC) and its etiolated mutant (CyT) were studied. CyC displays obvious dark green leaves, while CyT shows yellow leaves. There were obvious differences in phenotype and organelle ultrastructure between CyC and CyT. The total chlorophyll content in CyT was lower than that in CyC. Ca. 47.60 Gb clean data were obtained for the transcriptome from samples of CyC and CyT using Illumina Hiseq™ 2500 RNA-seq. The DEGs expression analysis results revealed that 1139 genes were differentially expressed between CyC and CyT. Several DEGs were further validated by qRT-PCR. Chlorophyll synthesis and photosynthesis were inhibited, and chlorophyll degradation contributed to the etiolated traits in the mutant. In our research, the phenotypic, physiochemical, and cytological traits were compared between CyC and CyT. The research will contribute to the understanding of the cloning and functional aspects of genes that involved in leaf color variation responses, and will accelerate leaf color breeding of orchids.</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Leaf color</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Transcriptome</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="650" ind1=" " ind2="4"><subfield code="a">Different expressed gene</subfield><subfield code="7">(dpeaa)DE-He213</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Ruan, Ruoxin</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Zhao, Fukang</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Li, Chunnan</subfield><subfield code="4">aut</subfield></datafield><datafield tag="700" ind1="1" ind2=" "><subfield code="a">Fu, Qiaojuan</subfield><subfield code="4">aut</subfield></datafield><datafield tag="773" ind1="0" ind2="8"><subfield code="i">Enthalten in</subfield><subfield code="t">Acta physiologiae plantarum</subfield><subfield code="d">Berlin : Springer, 1997</subfield><subfield code="g">45(2022), 1 vom: 14. 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Comprehensive transcriptome analysis discovers genes related to leaf color in Cymbidium ‘Sakura’ etiolated mutant

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