Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion

Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were...
Ausführliche Beschreibung

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Autor*in:	Peng, Liyuan [verfasserIn] Huang, Jianguo Huang, Chunyang Yang, Hongjun

Format:	E-Artikel
Sprache:	Englisch

Erschienen:	2023

Schlagwörter:	Proteinase Phosphatase Soil nutrients mobilization Plant growth-promotion Genome

Anmerkung:	© The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.

Übergeordnetes Werk:	Enthalten in: Plant and soil - Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948, 491(2023), 1-2 vom: 12. Juli, Seite 525-542
Übergeordnetes Werk:	volume:491 ; year:2023 ; number:1-2 ; day:12 ; month:07 ; pages:525-542

Links:	Volltext

DOI / URN:	10.1007/s11104-023-06131-2

Katalog-ID:	SPR053478827

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245	1	0	\|a Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
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520			\|a Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control.
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allfields	10.1007/s11104-023-06131-2 doi (DE-627)SPR053478827 (SPR)s11104-023-06131-2-e DE-627 ger DE-627 rakwb eng Peng, Liyuan verfasserin aut Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213 Huang, Jianguo aut Huang, Chunyang aut Yang, Hongjun aut Enthalten in Plant and soil Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948 491(2023), 1-2 vom: 12. Juli, Seite 525-542 (DE-627)270934979 (DE-600)1478535-3 1573-5036 nnns volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542 https://dx.doi.org/10.1007/s11104-023-06131-2 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 AR 491 2023 1-2 12 07 525-542
spelling	10.1007/s11104-023-06131-2 doi (DE-627)SPR053478827 (SPR)s11104-023-06131-2-e DE-627 ger DE-627 rakwb eng Peng, Liyuan verfasserin aut Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213 Huang, Jianguo aut Huang, Chunyang aut Yang, Hongjun aut Enthalten in Plant and soil Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948 491(2023), 1-2 vom: 12. Juli, Seite 525-542 (DE-627)270934979 (DE-600)1478535-3 1573-5036 nnns volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542 https://dx.doi.org/10.1007/s11104-023-06131-2 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 AR 491 2023 1-2 12 07 525-542
allfields_unstemmed	10.1007/s11104-023-06131-2 doi (DE-627)SPR053478827 (SPR)s11104-023-06131-2-e DE-627 ger DE-627 rakwb eng Peng, Liyuan verfasserin aut Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213 Huang, Jianguo aut Huang, Chunyang aut Yang, Hongjun aut Enthalten in Plant and soil Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948 491(2023), 1-2 vom: 12. Juli, Seite 525-542 (DE-627)270934979 (DE-600)1478535-3 1573-5036 nnns volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542 https://dx.doi.org/10.1007/s11104-023-06131-2 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 AR 491 2023 1-2 12 07 525-542
allfieldsGer	10.1007/s11104-023-06131-2 doi (DE-627)SPR053478827 (SPR)s11104-023-06131-2-e DE-627 ger DE-627 rakwb eng Peng, Liyuan verfasserin aut Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213 Huang, Jianguo aut Huang, Chunyang aut Yang, Hongjun aut Enthalten in Plant and soil Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948 491(2023), 1-2 vom: 12. Juli, Seite 525-542 (DE-627)270934979 (DE-600)1478535-3 1573-5036 nnns volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542 https://dx.doi.org/10.1007/s11104-023-06131-2 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 AR 491 2023 1-2 12 07 525-542
allfieldsSound	10.1007/s11104-023-06131-2 doi (DE-627)SPR053478827 (SPR)s11104-023-06131-2-e DE-627 ger DE-627 rakwb eng Peng, Liyuan verfasserin aut Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213 Huang, Jianguo aut Huang, Chunyang aut Yang, Hongjun aut Enthalten in Plant and soil Dordrecht [u.a.] : Springer Science + Business Media B.V, 1948 491(2023), 1-2 vom: 12. Juli, Seite 525-542 (DE-627)270934979 (DE-600)1478535-3 1573-5036 nnns volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542 https://dx.doi.org/10.1007/s11104-023-06131-2 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_101 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_206 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_374 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2018 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2108 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2119 GBV_ILN_2122 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2360 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_2946 GBV_ILN_2949 GBV_ILN_2951 GBV_ILN_4012 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4046 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4346 GBV_ILN_4393 GBV_ILN_4700 AR 491 2023 1-2 12 07 525-542
language	English
source	Enthalten in Plant and soil 491(2023), 1-2 vom: 12. Juli, Seite 525-542 volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542
sourceStr	Enthalten in Plant and soil 491(2023), 1-2 vom: 12. Juli, Seite 525-542 volume:491 year:2023 number:1-2 day:12 month:07 pages:525-542
format_phy_str_mv	Article
institution	findex.gbv.de
topic_facet	Proteinase Phosphatase Soil nutrients mobilization Plant growth-promotion Genome
isfreeaccess_bool	false
container_title	Plant and soil
authorswithroles_txt_mv	Peng, Liyuan @@aut@@ Huang, Jianguo @@aut@@ Huang, Chunyang @@aut@@ Yang, Hongjun @@aut@@
publishDateDaySort_date	2023-07-12T00:00:00Z
hierarchy_top_id	270934979
id	SPR053478827
language_de	englisch
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Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. 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author	Peng, Liyuan
spellingShingle	Peng, Liyuan misc Proteinase misc Phosphatase misc Soil nutrients mobilization misc Plant growth-promotion misc Genome Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
authorStr	Peng, Liyuan
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topic_title	Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion Proteinase (dpeaa)DE-He213 Phosphatase (dpeaa)DE-He213 Soil nutrients mobilization (dpeaa)DE-He213 Plant growth-promotion (dpeaa)DE-He213 Genome (dpeaa)DE-He213
topic	misc Proteinase misc Phosphatase misc Soil nutrients mobilization misc Plant growth-promotion misc Genome
topic_unstemmed	misc Proteinase misc Phosphatase misc Soil nutrients mobilization misc Plant growth-promotion misc Genome
topic_browse	misc Proteinase misc Phosphatase misc Soil nutrients mobilization misc Plant growth-promotion misc Genome
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title	Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
ctrlnum	(DE-627)SPR053478827 (SPR)s11104-023-06131-2-e
title_full	Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
author_sort	Peng, Liyuan
journal	Plant and soil
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author_browse	Peng, Liyuan Huang, Jianguo Huang, Chunyang Yang, Hongjun
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author-letter	Peng, Liyuan
doi_str_mv	10.1007/s11104-023-06131-2
title_sort	genetic sequencing provides insights into molecular and genetic mechanisms of lysobacter enzymogenes hyp18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
title_auth	Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
abstract	Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
abstractGer	Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
abstract_unstemmed	Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. Of the coding sequences, 75, 25, and 5 genes encoded peptide lytic enzymes, organic P hydrolases, and siderophore nonribosomal peptides, respectively. Twenty-one genes were involved in tryptophan metabolisms and 27 in siderophore porphyrin metabolisms. The bacteria produced proteinase and phosphatase (including acidity, neutrality, and alkalinity), siderophores, and IAA in pure culture. Despite different conversion rates, the bacteria mobilized both organic N and P in culture solutions under different conditions (including temperature, pH, carbon and N sources, and inorganic N and P supplies) and increased available N and P levels in soil. Compared with non-inoculation, bacterial inoculation increased tobacco seedling biomass by 20.86–38.12% in fertilized and non-fertilized soils. Conclusions The expression of multiple genes produced a great variety of proteases and phosphatases, which worked in various environments. L. enzymogenes HYP18 significantly promoted plant growth and N and P uptake in both fertilized and non-fertilized soils. The products of gene expression (proteases, phosphatases, siderophores and IAA) may act with soils or plants, leading to the improvement of growth and nutrient uptake in plant. Our results expanded the potential use of this bacterium in agriculture beyond plant disease control. © The Author(s), under exclusive licence to Springer Nature Switzerland AG 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.
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title_short	Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion
url	https://dx.doi.org/10.1007/s11104-023-06131-2
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author2	Huang, Jianguo Huang, Chunyang Yang, Hongjun
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doi_str	10.1007/s11104-023-06131-2
up_date	2024-07-03T19:48:43.099Z
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Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Aims To investigate the functions and explore the underlying mechanisms of Lysobacter enzymogenes HYP18, a biocontrol bacterium, in mobilization of N and P and plant growth promotion. Method The whole genome sequencing, bioinformatics analysis, liquid culture, soil incubation and pot experiment were conducted. Results The whole genome of this bacterium contained 6,140,221 bp and 5,342 coding sequences, and KEGG analysis enriched 42 metabolic pathways. 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Genetic sequencing provides insights into molecular and genetic mechanisms of Lysobacter enzymogenes HYP18 involved in soil organic nitrogen and phosphorus mobilization and plant growth promotion

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