Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.)
Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were i...
Ausführliche Beschreibung
Gespeichert in:
| Autor*in: |
Shah, Zamarud [verfasserIn] |
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| Format: |
E-Artikel |
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| Sprache: |
Englisch |
| Erschienen: |
2023 |
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| Schlagwörter: |
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| Anmerkung: |
© The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. |
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| Übergeordnetes Werk: |
Enthalten in: Genetic resources and crop evolution - Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953, 71(2023), 3 vom: 18. Juli, Seite 1053-1065 |
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| Übergeordnetes Werk: |
volume:71 ; year:2023 ; number:3 ; day:18 ; month:07 ; pages:1053-1065 |
| Links: |
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| DOI / URN: |
10.1007/s10722-023-01676-8 |
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SPR054644593 |
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| 520 | |a Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. | ||
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10.1007/s10722-023-01676-8 doi (DE-627)SPR054644593 (SPR)s10722-023-01676-8-e DE-627 ger DE-627 rakwb eng Shah, Zamarud verfasserin (orcid)0000-0001-6217-264X aut Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 Ahmad, Safwan aut Ullah, Arif aut Munir, Iqbal aut Munir, Umair aut Khan, Afrasyab aut Sultan, Warda aut Enthalten in Genetic resources and crop evolution Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953 71(2023), 3 vom: 18. Juli, Seite 1053-1065 (DE-627)320529029 (DE-600)2015535-9 1573-5109 nnns volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 https://dx.doi.org/10.1007/s10722-023-01676-8 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_211 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 71 2023 3 18 07 1053-1065 |
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10.1007/s10722-023-01676-8 doi (DE-627)SPR054644593 (SPR)s10722-023-01676-8-e DE-627 ger DE-627 rakwb eng Shah, Zamarud verfasserin (orcid)0000-0001-6217-264X aut Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 Ahmad, Safwan aut Ullah, Arif aut Munir, Iqbal aut Munir, Umair aut Khan, Afrasyab aut Sultan, Warda aut Enthalten in Genetic resources and crop evolution Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953 71(2023), 3 vom: 18. Juli, Seite 1053-1065 (DE-627)320529029 (DE-600)2015535-9 1573-5109 nnns volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 https://dx.doi.org/10.1007/s10722-023-01676-8 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_211 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 71 2023 3 18 07 1053-1065 |
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10.1007/s10722-023-01676-8 doi (DE-627)SPR054644593 (SPR)s10722-023-01676-8-e DE-627 ger DE-627 rakwb eng Shah, Zamarud verfasserin (orcid)0000-0001-6217-264X aut Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 Ahmad, Safwan aut Ullah, Arif aut Munir, Iqbal aut Munir, Umair aut Khan, Afrasyab aut Sultan, Warda aut Enthalten in Genetic resources and crop evolution Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953 71(2023), 3 vom: 18. Juli, Seite 1053-1065 (DE-627)320529029 (DE-600)2015535-9 1573-5109 nnns volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 https://dx.doi.org/10.1007/s10722-023-01676-8 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_211 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 71 2023 3 18 07 1053-1065 |
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10.1007/s10722-023-01676-8 doi (DE-627)SPR054644593 (SPR)s10722-023-01676-8-e DE-627 ger DE-627 rakwb eng Shah, Zamarud verfasserin (orcid)0000-0001-6217-264X aut Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 Ahmad, Safwan aut Ullah, Arif aut Munir, Iqbal aut Munir, Umair aut Khan, Afrasyab aut Sultan, Warda aut Enthalten in Genetic resources and crop evolution Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953 71(2023), 3 vom: 18. Juli, Seite 1053-1065 (DE-627)320529029 (DE-600)2015535-9 1573-5109 nnns volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 https://dx.doi.org/10.1007/s10722-023-01676-8 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_211 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 71 2023 3 18 07 1053-1065 |
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10.1007/s10722-023-01676-8 doi (DE-627)SPR054644593 (SPR)s10722-023-01676-8-e DE-627 ger DE-627 rakwb eng Shah, Zamarud verfasserin (orcid)0000-0001-6217-264X aut Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 Ahmad, Safwan aut Ullah, Arif aut Munir, Iqbal aut Munir, Umair aut Khan, Afrasyab aut Sultan, Warda aut Enthalten in Genetic resources and crop evolution Dordrecht [u.a.] : Springer Science + Business Media B.V, 1953 71(2023), 3 vom: 18. Juli, Seite 1053-1065 (DE-627)320529029 (DE-600)2015535-9 1573-5109 nnns volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 https://dx.doi.org/10.1007/s10722-023-01676-8 lizenzpflichtig Volltext GBV_USEFLAG_A SYSFLAG_A GBV_SPRINGER GBV_ILN_11 GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_31 GBV_ILN_32 GBV_ILN_39 GBV_ILN_40 GBV_ILN_60 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_90 GBV_ILN_95 GBV_ILN_100 GBV_ILN_105 GBV_ILN_110 GBV_ILN_120 GBV_ILN_138 GBV_ILN_150 GBV_ILN_151 GBV_ILN_152 GBV_ILN_161 GBV_ILN_165 GBV_ILN_170 GBV_ILN_171 GBV_ILN_187 GBV_ILN_211 GBV_ILN_213 GBV_ILN_224 GBV_ILN_230 GBV_ILN_250 GBV_ILN_281 GBV_ILN_285 GBV_ILN_293 GBV_ILN_370 GBV_ILN_602 GBV_ILN_636 GBV_ILN_647 GBV_ILN_702 GBV_ILN_2001 GBV_ILN_2003 GBV_ILN_2004 GBV_ILN_2005 GBV_ILN_2006 GBV_ILN_2007 GBV_ILN_2008 GBV_ILN_2009 GBV_ILN_2010 GBV_ILN_2011 GBV_ILN_2014 GBV_ILN_2015 GBV_ILN_2020 GBV_ILN_2021 GBV_ILN_2025 GBV_ILN_2026 GBV_ILN_2027 GBV_ILN_2031 GBV_ILN_2034 GBV_ILN_2037 GBV_ILN_2038 GBV_ILN_2039 GBV_ILN_2044 GBV_ILN_2048 GBV_ILN_2049 GBV_ILN_2050 GBV_ILN_2055 GBV_ILN_2056 GBV_ILN_2057 GBV_ILN_2059 GBV_ILN_2061 GBV_ILN_2064 GBV_ILN_2065 GBV_ILN_2068 GBV_ILN_2088 GBV_ILN_2093 GBV_ILN_2106 GBV_ILN_2107 GBV_ILN_2110 GBV_ILN_2111 GBV_ILN_2112 GBV_ILN_2113 GBV_ILN_2118 GBV_ILN_2129 GBV_ILN_2143 GBV_ILN_2144 GBV_ILN_2147 GBV_ILN_2148 GBV_ILN_2152 GBV_ILN_2153 GBV_ILN_2188 GBV_ILN_2190 GBV_ILN_2232 GBV_ILN_2336 GBV_ILN_2446 GBV_ILN_2470 GBV_ILN_2472 GBV_ILN_2507 GBV_ILN_2522 GBV_ILN_2548 GBV_ILN_4035 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4242 GBV_ILN_4246 GBV_ILN_4249 GBV_ILN_4251 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4326 GBV_ILN_4328 GBV_ILN_4333 GBV_ILN_4334 GBV_ILN_4335 GBV_ILN_4336 GBV_ILN_4338 GBV_ILN_4393 GBV_ILN_4700 AR 71 2023 3 18 07 1053-1065 |
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Enthalten in Genetic resources and crop evolution 71(2023), 3 vom: 18. Juli, Seite 1053-1065 volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 |
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Enthalten in Genetic resources and crop evolution 71(2023), 3 vom: 18. Juli, Seite 1053-1065 volume:71 year:2023 number:3 day:18 month:07 pages:1053-1065 |
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Shah, Zamarud @@aut@@ Ahmad, Safwan @@aut@@ Ullah, Arif @@aut@@ Munir, Iqbal @@aut@@ Munir, Umair @@aut@@ Khan, Afrasyab @@aut@@ Sultan, Warda @@aut@@ |
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Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</subfield></datafield><datafield tag="520" ind1=" " ind2=" "><subfield code="a">Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. 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Shah, Zamarud |
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Shah, Zamarud misc Genome wide misc Expression and evolutionary analysis Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) |
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Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) Genome wide (dpeaa)DE-He213 Expression and evolutionary analysis (dpeaa)DE-He213 |
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Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) |
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Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) |
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insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (hsp70) in cowpea (vigna unguiculata l.) |
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Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) |
| abstract |
Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. |
| abstractGer |
Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. |
| abstract_unstemmed |
Abstract Heat shock protein 70 is conserved a family of ubiquitously expressed proteins that help plants to withstand the major abiotic stresses. Although HSP70 genes have been investigated in a variety of plant species, yet, remain unexplored in cowpea. In the current study, 30 VuHSP70 genes were identified in cowpea genome and characterized for their physiochemical parameters. Super-family “HSP70” domain was found in all VuHSP70 genes. Signals for localization VuHSP70 proteins were detected mostly in cytoplasm. One hundred and twenty HSP70 genes, identified across diverse plant species, were divided into 6 groups. The duplication and speciation events contributed 13% and 47%, respectively, to the extension of HSP70 gene family. The VuHSP70 genes were mapped unequally on nine different chromosomes. Tandem and segmental duplication were recorded in each of the two VuHSP70 paralog gene pairs. Phylogeny based analysis divided VuHSP70 family into six groups. With the exception of group-I, all VuHSP70 genes associated with the same group showed similarities in motifs and gene structure while those belong to different groups exhibited differences. Cis-elements mainly associated with salinity, drought and heat stress were detected in promoter region of VuHSP70 gene. The Ka/Ks ratio of VuHSP70 paralog pairs explored purifying selection as the driven force for evolution of duplicated genes. VuHSP70 genes belong to Group-I and Group-II showed highest expression in all the evaluated tissues. Collectively, the current study is a good addition for further characterization of VuHSP70 genes and exploring the molecular mechanism associated with stress tolerance in cow pea. © The Author(s), under exclusive licence to Springer Nature B.V. 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. |
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Insilico-based genome-wide identification and structural characterization of heat shock proteins 70 (HSP70) in cowpea (Vigna unguiculata L.) |
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https://dx.doi.org/10.1007/s10722-023-01676-8 |
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Ahmad, Safwan Ullah, Arif Munir, Iqbal Munir, Umair Khan, Afrasyab Sultan, Warda |
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Ahmad, Safwan Ullah, Arif Munir, Iqbal Munir, Umair Khan, Afrasyab Sultan, Warda |
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10.1007/s10722-023-01676-8 |
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2024-07-04T02:29:41.909Z |
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| score |
7.4014015 |