Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i<
Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree spec...
Ausführliche Beschreibung
Autor*in: |
Zijian Cao [verfasserIn] Qianxi Ma [verfasserIn] Yuhao Weng [verfasserIn] Jisen Shi [verfasserIn] Jinhui Chen [verfasserIn] Zhaodong Hao [verfasserIn] |
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Format: |
E-Artikel |
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Sprache: |
Englisch |
Erschienen: |
2023 |
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Übergeordnetes Werk: |
In: Genes - MDPI AG, 2010, 14(2023), 3, p 770 |
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Übergeordnetes Werk: |
volume:14 ; year:2023 ; number:3, p 770 |
Links: |
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DOI / URN: |
10.3390/genes14030770 |
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Katalog-ID: |
DOAJ087357216 |
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10.3390/genes14030770 doi (DE-627)DOAJ087357216 (DE-599)DOAJf7fe911aa3c7450b85b97f1a3ba674d0 DE-627 ger DE-627 rakwb eng QH426-470 Zijian Cao verfasserin aut Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. <i<TPS</i< gene family <i<Liriodendron chinense</i< gene expression Genetics Qianxi Ma verfasserin aut Yuhao Weng verfasserin aut Jisen Shi verfasserin aut Jinhui Chen verfasserin aut Zhaodong Hao verfasserin aut In Genes MDPI AG, 2010 14(2023), 3, p 770 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:14 year:2023 number:3, p 770 https://doi.org/10.3390/genes14030770 kostenfrei https://doaj.org/article/f7fe911aa3c7450b85b97f1a3ba674d0 kostenfrei https://www.mdpi.com/2073-4425/14/3/770 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 3, p 770 |
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10.3390/genes14030770 doi (DE-627)DOAJ087357216 (DE-599)DOAJf7fe911aa3c7450b85b97f1a3ba674d0 DE-627 ger DE-627 rakwb eng QH426-470 Zijian Cao verfasserin aut Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. <i<TPS</i< gene family <i<Liriodendron chinense</i< gene expression Genetics Qianxi Ma verfasserin aut Yuhao Weng verfasserin aut Jisen Shi verfasserin aut Jinhui Chen verfasserin aut Zhaodong Hao verfasserin aut In Genes MDPI AG, 2010 14(2023), 3, p 770 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:14 year:2023 number:3, p 770 https://doi.org/10.3390/genes14030770 kostenfrei https://doaj.org/article/f7fe911aa3c7450b85b97f1a3ba674d0 kostenfrei https://www.mdpi.com/2073-4425/14/3/770 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 3, p 770 |
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10.3390/genes14030770 doi (DE-627)DOAJ087357216 (DE-599)DOAJf7fe911aa3c7450b85b97f1a3ba674d0 DE-627 ger DE-627 rakwb eng QH426-470 Zijian Cao verfasserin aut Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. <i<TPS</i< gene family <i<Liriodendron chinense</i< gene expression Genetics Qianxi Ma verfasserin aut Yuhao Weng verfasserin aut Jisen Shi verfasserin aut Jinhui Chen verfasserin aut Zhaodong Hao verfasserin aut In Genes MDPI AG, 2010 14(2023), 3, p 770 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:14 year:2023 number:3, p 770 https://doi.org/10.3390/genes14030770 kostenfrei https://doaj.org/article/f7fe911aa3c7450b85b97f1a3ba674d0 kostenfrei https://www.mdpi.com/2073-4425/14/3/770 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 3, p 770 |
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10.3390/genes14030770 doi (DE-627)DOAJ087357216 (DE-599)DOAJf7fe911aa3c7450b85b97f1a3ba674d0 DE-627 ger DE-627 rakwb eng QH426-470 Zijian Cao verfasserin aut Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. <i<TPS</i< gene family <i<Liriodendron chinense</i< gene expression Genetics Qianxi Ma verfasserin aut Yuhao Weng verfasserin aut Jisen Shi verfasserin aut Jinhui Chen verfasserin aut Zhaodong Hao verfasserin aut In Genes MDPI AG, 2010 14(2023), 3, p 770 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:14 year:2023 number:3, p 770 https://doi.org/10.3390/genes14030770 kostenfrei https://doaj.org/article/f7fe911aa3c7450b85b97f1a3ba674d0 kostenfrei https://www.mdpi.com/2073-4425/14/3/770 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 3, p 770 |
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10.3390/genes14030770 doi (DE-627)DOAJ087357216 (DE-599)DOAJf7fe911aa3c7450b85b97f1a3ba674d0 DE-627 ger DE-627 rakwb eng QH426-470 Zijian Cao verfasserin aut Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< 2023 Text txt rdacontent Computermedien c rdamedia Online-Ressource cr rdacarrier Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. <i<TPS</i< gene family <i<Liriodendron chinense</i< gene expression Genetics Qianxi Ma verfasserin aut Yuhao Weng verfasserin aut Jisen Shi verfasserin aut Jinhui Chen verfasserin aut Zhaodong Hao verfasserin aut In Genes MDPI AG, 2010 14(2023), 3, p 770 (DE-627)614096537 (DE-600)2527218-4 20734425 nnns volume:14 year:2023 number:3, p 770 https://doi.org/10.3390/genes14030770 kostenfrei https://doaj.org/article/f7fe911aa3c7450b85b97f1a3ba674d0 kostenfrei https://www.mdpi.com/2073-4425/14/3/770 kostenfrei https://doaj.org/toc/2073-4425 Journal toc kostenfrei GBV_USEFLAG_A SYSFLAG_A GBV_DOAJ GBV_ILN_20 GBV_ILN_22 GBV_ILN_23 GBV_ILN_24 GBV_ILN_39 GBV_ILN_40 GBV_ILN_62 GBV_ILN_63 GBV_ILN_65 GBV_ILN_69 GBV_ILN_70 GBV_ILN_73 GBV_ILN_74 GBV_ILN_95 GBV_ILN_105 GBV_ILN_110 GBV_ILN_151 GBV_ILN_161 GBV_ILN_170 GBV_ILN_213 GBV_ILN_230 GBV_ILN_285 GBV_ILN_293 GBV_ILN_602 GBV_ILN_2014 GBV_ILN_4012 GBV_ILN_4037 GBV_ILN_4112 GBV_ILN_4125 GBV_ILN_4126 GBV_ILN_4249 GBV_ILN_4305 GBV_ILN_4306 GBV_ILN_4307 GBV_ILN_4313 GBV_ILN_4322 GBV_ILN_4323 GBV_ILN_4324 GBV_ILN_4325 GBV_ILN_4338 GBV_ILN_4367 GBV_ILN_4700 AR 14 2023 3, p 770 |
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Genome-Wide Identification and Expression Analysis of <i<TPS</i< Gene Family in <i<Liriodendron chinense</i< |
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Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. |
abstractGer |
Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. |
abstract_unstemmed |
Terpenoids play a key role in plant growth and development, supporting resistance regulation and terpene synthase (TPS), which is the last link in the synthesis process of terpenoids. <i<Liriodendron chinense,</i< commonly called the Chinese tulip tree, is a rare and endangered tree species of the family Magnoliaceae. However, the genome-wide identification of the <i<TPS</i< gene family and its transcriptional responses to development and abiotic stress are still unclear. In the present study, we identified a total of 58 <i<TPS</i< genes throughout the <i<L. chinense</i< genome. A phylogenetic tree analysis showed that they were clustered into five subfamilies and unevenly distributed across six chromosomes. A cis-acting element analysis indicated that <i<LcTPSs</i< were assumed to be highly responsive to stress hormones, such as methyl jasmonate (MeJA) and abscisic acid (ABA). Consistent with this, transcriptome data showed that most <i<LcTPS</i< genes responded to abiotic stress, such as cold, drought, and hot stress, at the transcriptional level. Further analysis showed that <i<LcTPS</i< genes were expressed in a tissue-dependent manner, especially in buds, leaves, and bark. Quantitative reverse transcription PCR (qRT-PCR) analysis confirmed that <i<LcTPS</i< expression was significantly higher in mature leaves compared to young leaves. These results provide a reference for understanding the function and role of the <i<TPS</i< family, laying a foundation for further study of the regulation of <i<TPS</i< in terpenoid biosynthesis in <i<L. chinense</i<. |
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